DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAe and grn

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001262366.1 Gene:grn / 40962 FlyBaseID:FBgn0001138 Length:712 Species:Drosophila melanogaster


Alignment Length:682 Identity:186/682 - (27%)
Similarity:258/682 - (37%) Gaps:194/682 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 QHQQQAATSVGVVVQTGQ-AGVSEPEEQYVVVPRNQRRILTTAGTLELNEAREGEPSTNASNASS 147
            :|:..|..|..   ..|| |...||:.::.:....|....|.||     :.....|.|...:::.
  Fly   136 EHKSFAPASAW---SMGQFACPQEPQVEHKLGQMGQSHQTTAAG-----QHSFPFPPTPPKDSTP 192

  Fly   148 GSASDSHIEYQRSAHQSPGATHYVQMAPRNAEVTEQVGAAAGAPPGTIFAYPIICNGDDVAAIKI 212
            .|......|||               |..||.:.:|   |.|:...|          |...|:.|
  Fly   193 DSVQTGPSEYQ---------------AVMNAFMHQQ---ATGSTSLT----------DASCALDI 229

  Fly   213 E-TLEKGEATGESQQQQQQLQQHQHQQQQQCPTPNGASYGETIVISSEAEALQHHHQQQQQHQQQ 276
            : :::.|.|:|.|..........: |::....|.|.         ||.:.:.|...|||||.|||
  Fly   230 KPSIQNGSASGSSGSGTTHTSTPK-QREGTASTTNS---------SSNSSSSQQQQQQQQQQQQQ 284

  Fly   277 QHQQQHH---------QHQAAAAASAAAQTVHIATSSHG---GTVRFVTEDVRFTTAGP-----E 324
            |.|...:         ...||||:.:||.....||||:|   ||.:      .:::.|.     .
  Fly   285 QQQSSSNTTASSNTSASSSAAAASLSAAVAASAATSSNGLFDGTAQ------AYSSGGSGGGGGG 343

  Fly   325 TSASNMYYDVPVVDGSVHANESKTYADLGNAYAPFPPSSSFSSNSYAA-------TLQQGNTIYS 382
            .|.|..|      |.|.:|  |..:|...:..|....::.|.|:|.||       ...|.:..:.
  Fly   344 GSGSGGY------DTSSYA--SYHHAAAHHQAAAVAAANMFQSSSVAAAAVRHSMAAAQAHHHHH 400

  Fly   383 VPGTGQFLAKSESGLNQTGLLRQTGPATFQTISFEGGNGIEPLWASPAPPEYQSVQFSNFHPQVI 447
            ...:|...:.|.|||:  ||....| .|....|..|.:|                          
  Fly   401 HHHSGHHHSGSSSGLH--GLGGSVG-GTAGMGSMSGNSG-------------------------- 436

  Fly   448 DEYGSGNMSTSHWPPASSIGQYDGS-------LVTASSTSSPNHELKCENCHG---PFLRKG--S 500
               |:|::| .|    |..|...||       :.|...||:...|  |.||..   |..|:.  .
  Fly   437 ---GAGSLS-GH----SGAGSNAGSNCLDVKPVRTKPRTSAEGRE--CVNCGATSTPLWRRDGTG 491

  Fly   501 EYFCPNCPAFMRM----APRITQRQAKPK--------AAAAPNNRRNGVTCANCQTNSTTLWRRN 553
            .|.|..|..:.:|    .|.|     |||        .:||   :|.|.:||||:|.:|||||||
  Fly   492 HYLCNACGLYYKMNGQNRPLI-----KPKRRLTLQSLQSAA---KRAGTSCANCKTTTTTLWRRN 548

  Fly   554 NEGNPVCNACGLYYKLHNMNRPLSMKKEGIQKRKR-------KPKNNGGAPMHRAPLPSMSQGVN 611
            ..|.||||||||||||||:||||:|||||||.|.|       |.|..||..:   |:     |.:
  Fly   549 ASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCL---PI-----GGH 605

  Fly   612 L-MAN-SPLYPSQVPVSMLNSQLNSQQNSSPELH----DMSTTGQAGGQRVVSISLNATAPPTPD 670
            | |.: .||.||:......::.:....:.|..||    .|..:...||...:..|.......:..
  Fly   606 LGMGDFKPLDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGALGASSGLQGGFSTA 670

  Fly   671 GTLNMSARHHVTGESHSPYSQQSTPQSQSPHL 702
            |:|                |....|.||..||
  Fly   671 GSL----------------SGAVVPHSQPYHL 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 37/48 (77%)
ZnF_GATA 538..589 CDD:238123 40/57 (70%)
grnNP_001262366.1 ZnF_GATA 470..517 CDD:214648 15/53 (28%)
ZnF_GATA 473..517 CDD:238123 15/50 (30%)
ZnF_GATA 529..578 CDD:214648 37/48 (77%)
ZnF_GATA 533..583 CDD:238123 39/49 (80%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438457
Domainoid 1 1.000 63 1.000 Domainoid score I2907
eggNOG 1 0.900 - - E1_COG5641
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - mtm9213
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.840

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