DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and gata1a

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_571309.2 Gene:gata1a / 30481 ZFINID:ZDB-GENE-980526-268 Length:418 Species:Danio rerio


Alignment Length:422 Identity:125/422 - (29%)
Similarity:173/422 - (40%) Gaps:99/422 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   298 VHIATSSHGGTVRFVTEDVRFTTAGPETSASNMYYDVPVVDGSVHANESKTY------------A 350
            |:..|.|  |.:..|..|..|.::. ||.....||..     ||.:..|.:|            :
Zfish    22 VNYTTDS--GLLPPVDVDEPFYSSS-ETDLLPSYYST-----SVQSRASSSYRHSPVRQVYSSQS 78

  Fly   351 DLGNAY-----------APFPPSSS-FSSNSYAATLQQGNT---IYSVPGTGQFLAKSESGLNQT 400
            .|||..           :|:.|:|: :||:.:|.|....:|   ||....|..|.:..| |....
Zfish    79 ILGNIQWLDNSAGHSLNSPYNPTSTVWSSSPFAKTPLHSHTSTSIYQNTATPSFTSPKE-GFPSP 142

  Fly   401 GLLRQTGPATFQTISFE-----GGNGIEPLWASPAP-----PEYQSVQFSNFHPQVIDEYGSGNM 455
            ....:..|...:.:..|     .|:|...|..|.|.     |.          |.::..||| .|
Zfish   143 SRDGKDSPRLQEVLKAERLSPMSGSGSSFLNLSSATGGVYGPS----------PHMLSPYGS-YM 196

  Fly   456 STSHWPPASSIGQYDGSLVTASSTS---------SPNHELKCENCHG---PFLRKG--SEYFCPN 506
            |||....::::....|..::.||.|         ||....:|.||..   |..|:.  ..|.|..
Zfish   197 STSQDYSSAALYSTGGPWMSPSSYSPKLRNKMRLSPPEARECVNCGATATPLWRRDGTGHYLCNA 261

  Fly   507 CPAFMRM----APRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTTLWRRNNEGNPVCNACGLYY 567
            |..:.:|    .|.|     :||..... ::|.|..||||.|::|||||||..|.|||||||||:
Zfish   262 CGLYHKMNGQNRPLI-----RPKKRLIV-SKRAGTQCANCHTSTTTLWRRNASGEPVCNACGLYF 320

  Fly   568 KLHNMNRPLSMKKEGIQKRKRKPKN-------NGGAPM-----HRAPLPSMSQGVNLMANSPL-- 618
            ||||:||||:|||:|||.|.||..|       |..:.:     |.|| |....|...:...||  
Zfish   321 KLHNVNRPLTMKKDGIQTRNRKVSNRNKKGKKNAASEVYPDMSHMAP-PDEHVGAYSLNPGPLLS 384

  Fly   619 --YPSQ-VPVSMLNSQLNSQQNSSPELHDMST 647
              :|:. :|.|.|:|.........|....|.|
Zfish   385 YSHPAHLLPTSTLHSSTTLPYTHHPNSGMMPT 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 35/48 (73%)
ZnF_GATA 538..589 CDD:238123 37/50 (74%)
gata1aNP_571309.2 ZnF_GATA 237..281 CDD:238123 13/48 (27%)
ZnF_GATA 291..342 CDD:238123 37/50 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.