DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and Trps1

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:XP_038934688.1 Gene:Trps1 / 299897 RGDID:1311883 Length:1319 Species:Rattus norvegicus


Alignment Length:890 Identity:182/890 - (20%)
Similarity:294/890 - (33%) Gaps:322/890 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 LESS--NGAD----------QLAQQTANNLDEQQEQQQQHQQQAATSVGVVVQTGQAGVSEPEEQ 110
            |:||  ||.:          ..:.:::::|...:...:||        |.|    |:|...||..
  Rat   447 LDSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYGKQH--------GAV----QSGGLNPELN 499

  Fly   111 YVVVPR----NQRRILTTAGTLELNEAREGEPSTNASNASSGS---------ASDSHI------- 155
             ..:||    ||.         :|.::.||||.|......||:         |.|:.:       
  Rat   500 -DKLPRGSVINQN---------DLAKSVEGEPLTKPEKGLSGAKKKDFPSKGAEDNMVTSYNCQF 554

  Fly   156 -EYQRSAHQSPGA-------THYVQM-------------APRN--------AEVTEQVGAAAGAP 191
             :::.|....|..       .||.|:             .||.        .|:|          
  Rat   555 CDFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGEIT---------- 609

  Fly   192 PGTIFAYPIICNGDDVA--AIKIETLEKGEATGESQQQQQQLQQHQHQQQQQC--PTPNGASYGE 252
                  ||..|...:.:  |:.:..|..|.| |.|:.:         .|..||  .||       
  Rat   610 ------YPFACRKSNCSHCALLLLHLSPGVA-GSSRVK---------HQCHQCSFSTP------- 651

  Fly   253 TIVISSEAEALQHHHQQQQQHQQQQHQQQHHQHQAAAAASAAAQTVHIATSSHGGT----VRFVT 313
                  :.:.|..|::...:.|....:|:.: |...:....||:.    :..|..|    :..|.
  Rat   652 ------DVDVLLFHYETMHESQASDVKQEVN-HLLGSEGQQAARD----SKEHSCTKCDFITQVE 705

  Fly   314 EDVR---------------FTTAGPETSASNMYYDVPVVDGSVHANESKTYADLGNAYAPFPPSS 363
            |::.               ..|||...|....:       .:||..|.:.....|.         
  Rat   706 EEISRHYRRAHSCYKCRQCSFTAGDTQSLLEHF-------NTVHCQEQEVATANGE--------- 754

  Fly   364 SFSSNSYAATLQQGNTIYSVPGTGQFLAKSESGLNQTGLLRQTGPATF-QTISFEGGNGI-EPLW 426
                       :.|:.|.::....:...|..|.||....:.:|.|.:. :....:...|: :.:|
  Rat   755 -----------EDGHAIPTIKEEPKIDLKVYSLLNPDSKMGETVPESIVKREKLDDKEGLKDKIW 808

  Fly   427 ASPAPPEYQSVQFSNFHPQVIDEYGSGNMSTSHWPPASSIGQYDGSLVTASSTS---------SP 482
            ...:..:.:.|.:.          |:..:..|.....:|:|     |:|..|:|         ||
  Rat   809 TESSTDDLRGVTWR----------GADILRGSPSYTQASLG-----LLTPVSSSQEQTKTLRDSP 858

  Fly   483 NHELK--CENCHGPFLRKGSEYFCPNCPAFMRMAPRITQR-----QAKPK-----------AAAA 529
            |.|..  ....:|  |...::.|....||....:..:||:     :.|.|           .:..
  Rat   859 NVEAAHLARPMYG--LAVDTKGFLQGAPAGGEKSASLTQQYPASGEGKTKDESQSLLRAVTISGT 921

  Fly   530 PNNRR---NGVTCANCQTNSTTLWRRNNEGNPVCNACGLYYKLHNMNRPLSMKKEG-----IQKR 586
            ||.||   :||.||||.|..|:|||:|..|..||||||||.|||:..|||::.|:.     |::|
  Rat   922 PNRRRRRGSGVFCANCLTTKTSLWRKNANGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRR 986

  Fly   587 KRKPKNN--------------------GGAPMHR-------------APLPSMS----QGVNLMA 614
            .||..|.                    .|:|:.|             .||||:|    ||....:
  Rat   987 TRKRLNPEALQAEQLNKQQRGSGEEQVNGSPLERRSEDHLSESHQREIPLPSLSKYEAQGSLTKS 1051

  Fly   615 NSPLYPSQVPVSM--------LNSQLNSQQNSSPELHDMSTTGQAGGQRVVSISLNATAPPTPDG 671
            :|...|..|..::        |:.|:.|.|.|         ||..|....||....::...:|..
  Rat  1052 HSAQQPVLVSQTLDIHKRMQPLHIQIKSPQES---------TGDPGNSSSVSDGKGSSERGSPIE 1107

  Fly   672 TLNMSARHHVTGESHSPYSQQSTP-----------QSQS--------------------PHLPGT 705
            .....|:|.......||..:...|           ||::                    .|:|| 
  Rat  1108 KYMRPAKHPNYSPPGSPIEKYQYPLFGVPFVHNDFQSEADWLRFWSKYKLSVPGNPHYLSHVPG- 1171

  Fly   706 VPINRQIVQPVPTIE-----SSRSSNTELTPSVITRTGLPERSSN 745
            :|...|...|.||..     |:..|:.::...:..:...|..::|
  Rat  1172 LPNPCQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTAN 1216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 29/56 (52%)
ZnF_GATA 538..589 CDD:238123 28/55 (51%)
Trps1XP_038934688.1 ZnF_GATA 933..989 CDD:238123 28/55 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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