DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and gaf1

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_588278.2 Gene:gaf1 / 2539024 PomBaseID:SPCC1902.01 Length:855 Species:Schizosaccharomyces pombe


Alignment Length:882 Identity:182/882 - (20%)
Similarity:285/882 - (32%) Gaps:284/882 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KMEQQTTQQQQQQQQQQQQQQQLQQQQHQALTKQQL-QLLDKIKLESSNG--ADQLAQQ------ 70
            |.::.||.:...::...              |...| ::..|.|.|.|||  .:.|..:      
pombe    20 KFDKSTTDESSSKEDYS--------------TMSDLWKMFSKAKSELSNGRRVENLTWRLMSINL 70

  Fly    71 ----TANNLDEQQEQQQQHQQQAATSVGVVVQTGQAGV----SEPEEQYVVVPRNQRRILTTAGT 127
                |.|...............|.:|...|..|..|..    |:.|.:...:|.......||..:
pombe    71 QKNLTPNGDSNTLTPDTFSDPTAPSSAQSVPPTSSAETTADNSDTEMKLNPIPAYSVPADTTGSS 135

  Fly   128 L-ELN--EAREGEPSTNASNASS--GSASDSHIEYQRSAHQSPGATHYVQMAPRNAEVTEQVGAA 187
            | |.|  :.|..:.|.:.|.|.|  .|.:|||.. ..:|.|.|   |.::..|            
pombe   136 LMEFNYIQRRVRKTSFDESTAKSKKRSIADSHFP-DPNAMQRP---HDLESQP------------ 184

  Fly   188 AGAPPGTIFAYPIICNGDDVAAIKIETLEKGEATGESQQQQQQL---------QQHQHQQQQQCP 243
                    |:||.|...:....:|.:.    :::..|......|         ..|.|.      
pombe   185 --------FSYPKIHASNSFNFVKRDI----DSSNFSNLDASALPISPPSDFFSVHSHN------ 231

  Fly   244 TPNGASYGETIVISSEAEALQHHHQQQQQHQQQQHQQQHHQHQAAAAASAAAQTVHIATSSHGGT 308
            .||..   .:|..:|...|        ..:|:.:...:|..............:...:...:||.
pombe   232 LPNAP---PSIPANSNNSA--------SPNQRIKASPKHADTDVLGLDFDMTPSEPSSFPENGGF 285

  Fly   309 VRFVTEDVRFTTAGPETSASNMY--------YDVP--VVDGSVHANE------SKTYADLGNAYA 357
            ..||..:....|..| :||:|.:        :.:|  |...|.|||.      |.:|...|....
pombe   286 PSFVDANTHEQTLFP-SSATNSFSFEHGSAGFPIPGSVPSTSYHANTASEDGFSSSYNSQGLFGI 349

  Fly   358 PFPPSSSFSSNSYAATLQQGNTIYSV--------------PGTGQFLAKSESGLNQTGLLRQTGP 408
            ..|.||..:.|........||.|:.|              ||:    ..|...:|....|..:.|
pombe   350 SSPLSSGVTPNQSFFPDVSGNNIFDVSRNNHEVSSPLIQSPGS----YVSMPSINMVSSLPISAP 410

  Fly   409 A------------TFQTISF----EGGNGIEPLWASPAPPEYQSVQFSNFHPQVID----EYGSG 453
            .            ||:|.|.    :|.:|::.          ......:|:|.:..    |:.||
pombe   411 VPNSNSQFPRRPNTFRTNSSKSVGQGSSGVDS----------NQENAESFNPSISSHNSAEWASG 465

  Fly   454 NMSTSH------------WPPASSIGQYDGSLVTASSTSS-----------------PNHELKCE 489
            . :|.|            .|....:|...|.....|::|:                 |:.::..:
pombe   466 E-TTGHSSNSPLPGSDMFSPQFMRVGTAMGVAPVRSNSSNNFGQNFFHQTSPQFSAVPHRKVSAQ 529

  Fly   490 NC-----------HGPFLRKGSEYFCPNCPAFM------RMAPRITQRQAKPKAA---------- 527
            :.           |.|:|.:.:.......|..:      .:..|.|...|.|:||          
pombe   530 DTNLMGSSPGMYNHMPYLNRATSANSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTKKD 594

  Fly   528 ------------------AA------PNNRRNGV-----TCANCQTNSTTLWRRNNEGNPVCNAC 563
                              ||      .|.||...     ||.||||.:|.||||:.:|.|:||||
pombe   595 RSVSFNINKNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNAC 659

  Fly   564 GLYYKLHNMNRPLSMKKEGIQKRKR------KPKNNGG-------------------APMH-RAP 602
            ||:.|::.:.||||:|.:.|:||.|      .||.:||                   |.|. :|.
pombe   660 GLFMKINGVVRPLSLKTDVIKKRNRGVGTSATPKQSGGRKGSTRKSSSKSSSAKSTAADMKPKAD 724

  Fly   603 LPSMSQGVNLMANSPLYPSQVPVSMLNSQLNSQQNSSPELHDMSTTGQAGGQRVVSI-SLNATAP 666
            ..|:|.|. :..|..|...::|   |:..:.|      .|...|:..::..|.::|. :|||   
pombe   725 SKSISPGF-VGGNQSLSSERIP---LDPSMRS------PLQQQSSENESKSQSMLSANNLNA--- 776

  Fly   667 PTPDGTLNMSARHHVTGESHSPYSQQSTPQSQSPHLP 703
            ...|..|..|   ...|.:|...:..|..|.::...|
pombe   777 GVNDFGLGFS---EGLGSAHLDSNDSSMVQGKNDFAP 810

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 26/53 (49%)
ZnF_GATA 538..589 CDD:238123 29/56 (52%)
gaf1NP_588278.2 DUF1752 41..67 CDD:285721 8/25 (32%)
GAT1 183..841 CDD:227928 142/701 (20%)
ZnF_GATA 634..684 CDD:238123 28/49 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.000

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