DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAe and elt-1

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001033435.1 Gene:elt-1 / 177794 WormBaseID:WBGene00001249 Length:488 Species:Caenorhabditis elegans


Alignment Length:482 Identity:127/482 - (26%)
Similarity:185/482 - (38%) Gaps:148/482 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 HQQQQHQQQHHQHQAAAAASAAAQTVHIATSSHGGTVRFVTEDVRFTTAGP---ETSASNMYYDV 334
            |..|..:|::..::.......      :.||| ||.....|......:..|   .|||:|.|...
 Worm    63 HISQPIEQENMDYEGKPVEFT------LGTSS-GGASLAPTSSTTAASIAPFSYNTSATNYYNTT 120

  Fly   335 P----------VVDGSVHANESKTYADL---------GNAYAP--FPPSSSFSSNSY----AATL 374
            |          ...|:....:...::.:         |....|  |.|::..::..|    |||.
 Worm   121 PSSYPMFLNYQYAGGTTVTTDMDAFSGMDMSMNNGVFGTQNNPSYFYPTTQLNTYGYDTLAAATT 185

  Fly   375 QQGNTIYSVPGTGQFLAKSESGLNQTGLLRQTGPATFQTISFEGGNGI---EPLW---ASPAPPE 433
            ..|.|:            :.:.||               ::...|||.   :|:.   .|.....
 Worm   186 ASGITV------------NNNQLN---------------VNIVQGNGTIVPQPITQNIISTVSNV 223

  Fly   434 YQSVQFSNFHPQVIDEYGSGNMSTSHWPPASSIGQYDGSLVTASSTSSPNHEL------------ 486
            ..||..:|..|  :...|....|||.       |....|..:|:|||:|.:.:            
 Worm   224 QSSVPINNSQP--LTPTGLAGCSTSS-------GSSSASSSSANSTSTPKNTISKANRSSGGANN 279

  Fly   487 --------KCENC--HGPFL--RKGS-EYFCPNCPAFMRM----APRITQRQAKPKAAAAPNNRR 534
                    :|.||  |...|  |.|| .|.|..|..:.:|    .|.:     |||.......:|
 Worm   280 SQFSTEDRECVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARPLV-----KPKKRQQNAQKR 339

  Fly   535 NGVTCANCQTNSTTLWRRNNEGNPVCNACGLYYKLHNMNRPLSMKKEGIQKRKRK---------P 590
            .|:.|.||:||:|||||||.||:|||||||||:|||.:.||::|||:|||.|.||         .
 Worm   340 TGIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKVERPITMKKDGIQTRNRKLSAKGSRRMK 404

  Fly   591 KNNGGAPMHRAPLP----SMSQGVNL-------MANSP---LYPSQVPVSMLNSQLNSQQNS--- 638
            |.|||.|.... :|    |:|.|:.|       |.|:.   :.|:.......|...||.::.   
 Worm   405 KENGGTPTSMG-MPTTSSSISSGIELDQSGVWGMKNTQPMLMTPTAYAFPASNFYFNSIEDQLEY 468

  Fly   639 ---SPELHDMSTTGQAGGQRVVSISLN 662
               .|.:.|.      ||| :.:::||
 Worm   469 KTCPPMMVDF------GGQ-MKNLNLN 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 33/48 (69%)
ZnF_GATA 538..589 CDD:238123 35/50 (70%)
elt-1NP_001033435.1 ZnF_GATA 285..332 CDD:214648 16/51 (31%)
ZnF_GATA 288..339 CDD:238123 16/55 (29%)
ZnF_GATA 339..388 CDD:214648 33/48 (69%)
ZnF_GATA 343..394 CDD:238123 35/50 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I6358
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2600
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.960

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