DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and egl-18

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001294448.1 Gene:egl-18 / 176992 WormBaseID:WBGene00001186 Length:379 Species:Caenorhabditis elegans


Alignment Length:596 Identity:116/596 - (19%)
Similarity:179/596 - (30%) Gaps:274/596 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 QQQQQQLQQQQHQALTKQQLQLLDKIKLESSNGADQLAQQTANNLDEQQEQQQQHQQQAATSVGV 95
            :.:.:..:||.|:.|.:..    |    |..:|..||.:..|..:....|:..:.|.:       
 Worm     8 ETRPESAEQQHHEVLQRPS----D----EPCSGCKQLQKDVAKTISMVMERMDKLQYR------- 57

  Fly    96 VVQTGQAGVSEPEEQYVVVPRNQRRILTTAGTLELNEAREGEPSTNASNASSGSASDSHIEYQRS 160
                                              |:|..:......:|:.|||.||.|..|    
 Worm    58 ----------------------------------LDELLKENNELKSSSVSSGKASPSPAE---- 84

  Fly   161 AHQSPGATHYVQMAP----RNAEVTEQVGAAAGAPPGTIFAYPIICNGDDVAAIKIETLEKGEAT 221
            :..||.....| :||    |..:..|:...||.:|   :..:..:.||     ...:.|......
 Worm    85 SRSSPKLVETV-VAPVSGARKRKPKERSPPAAASP---LPDFSNLMNG-----FMFDPLNMSNPN 140

  Fly   222 GES------QQQQQQLQQHQHQQQQQCPTPNGASYGETIVISSEAEALQHHHQQQQQHQQQQHQQ 280
            |..      ||||||.|.|||.:.||..:|            .::::::......|..:|::.::
 Worm   141 GMMQLLSMVQQQQQQQQHHQHIENQQSVSP------------PQSKSVKIEDPMDQDVKQEESER 193

  Fly   281 QHHQHQAAAAASAAAQTVHIATSSHGGTVRFVTEDVRFTTAGPETSASNMYYDVPVVDGSVHANE 345
            .                                                   |:|.      |.|
 Worm   194 S---------------------------------------------------DIPT------ATE 201

  Fly   346 SKTYADLGNAYAPFPPSSSFSSNSYAATLQQGNTIYSVPGTGQFLAKSESGLNQTGLLRQTGPAT 410
            ::...|...|        .||||                                      |.|.
 Worm   202 AQNLLDALTA--------QFSSN--------------------------------------GQAF 220

  Fly   411 FQTISFEGGNGIEPLWASPAPPEYQSVQFSNFHPQVIDEYGSGNMSTSHWPPASSIGQYDGSLVT 475
            |||                                          ||:. ||:|| .|....:..
 Worm   221 FQT------------------------------------------STTS-PPSSS-SQVQAVIEA 241

  Fly   476 ASSTSSPNHELKCENCHGPFLRKGSEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCA 540
            .::.||.:.:              |..|                  .|.:.:..||..|    |:
 Worm   242 VATPSSQSQD--------------SSMF------------------EKTETSGDPNAAR----CS 270

  Fly   541 NCQTNSTTLWRRNNEGNPVCNACGLYYKLHNMNRPLSMKKEGIQ---KRKRKPKNNGGAP----M 598
            ||:|:.||.|||:.||..|||.|||||:||.:.||:.|:|..||   :||.|.|.:..|.    .
 Worm   271 NCRTDKTTAWRRDAEGKLVCNPCGLYYRLHKVRRPIEMRKNHIQQRYRRKNKEKESSAATQIFNQ 335

  Fly   599 HRAPLPSMSQG 609
            ....:|:|:.|
 Worm   336 LLTQMPTMATG 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 26/48 (54%)
ZnF_GATA 538..589 CDD:238123 29/53 (55%)
egl-18NP_001294448.1 ZnF_GATA 268..320 CDD:238123 28/55 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2600
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.860

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