DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and Gata1

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_032115.1 Gene:Gata1 / 14460 MGIID:95661 Length:413 Species:Mus musculus


Alignment Length:420 Identity:115/420 - (27%)
Similarity:159/420 - (37%) Gaps:102/420 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   313 TEDVRFTTAGPE-----TSASNMYYDVPVVDGSVHANESKTYA--------DLGNAYAPFPPSSS 364
            ::...|.::|||     :|:::............:..|::.|.        .|.|:....|..|.
Mouse    28 SDSTGFFSSGPEGLDAASSSTSPNAATAAASALAYYREAEAYRHSPVFQVYPLLNSMEGIPGGSP 92

  Fly   365 FSSNSYAAT-LQQGNTIYSVPGTGQFLAKSESGLNQTGLLRQTGPATFQTISFEGGNGIEP--LW 426
            ::|.:|..| |...:|:  .|....  |.|::..:|.|....|...|.:|      ..:.|  |.
Mouse    93 YASWAYGKTALYPASTV--CPSHED--APSQALEDQEGKSNNTFLDTLKT------ERLSPDLLT 147

  Fly   427 ASPAPPEYQSVQFSNFHPQVIDEYGSGNMSTSHWPP--------ASSIGQYDGSLVTASSTSSPN 483
            ...|.|....|..|        .||..:..:..:.|        |.|..::.|||..|     |.
Mouse   148 LGTALPASLPVTGS--------AYGGADFPSPFFSPTGSPLSSAAYSSPKFHGSLPLA-----PC 199

  Fly   484 HELKCENCHG---PFLRKG--SEYFCPNCPAFMRM----APRITQRQAKPKAAAAPNNRRNGVTC 539
            ...:|.||..   |..|:.  ..|.|..|..:.:|    .|.|     :||..... ::|.|..|
Mouse   200 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI-----RPKKRMIV-SKRAGTQC 258

  Fly   540 ANCQTNSTTLWRRNNEGNPVCNACGLYYKLHNMNRPLSMKKEGIQKRKRKPKNNG---------G 595
            .||||.:|||||||..|:|||||||||:|||.:||||:|:|:|||.|.||....|         |
Mouse   259 TNCQTTTTTLWRRNASGDPVCNACGLYFKLHQVNRPLTMRKDGIQTRNRKASGKGKKKRGSNLAG 323

  Fly   596 APMHRAP-------LPSMSQG----------VNLMANSPLYPSQVPVSMLNSQLNSQQNSSPELH 643
            |.....|       ..|.|.|          :.....:.||....||.:          |.|..|
Mouse   324 AGAAEGPAGGFMVVAGSSSSGNCGEVASGLALGTAGTAHLYQGLGPVVL----------SGPVSH 378

  Fly   644 DMSTTGQAGGQRVVSISLNATAP-PTPDGT 672
            .|...|...|....|.   .|.| ||...|
Mouse   379 LMPFPGPLLGSPTTSF---PTGPAPTTSST 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 33/48 (69%)
ZnF_GATA 538..589 CDD:238123 35/50 (70%)
Gata1NP_032115.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 29..49 5/19 (26%)
Interaction with MED1 and CCAR1. /evidence=ECO:0000269|PubMed:24245781 200..330 55/135 (41%)
ZnF_GATA 203..249 CDD:238123 13/50 (26%)
Required for interaction with ZFPM1. /evidence=ECO:0000250 203..222 5/18 (28%)
Interaction with CALCOCO1. /evidence=ECO:0000269|PubMed:24245781 249..315 40/66 (61%)
ZnF_GATA <268..308 CDD:238123 28/39 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 297..325 10/27 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 391..413 6/18 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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