DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srp and GAT4

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_012278.3 Gene:GAT4 / 854830 SGDID:S000001452 Length:121 Species:Saccharomyces cerevisiae


Alignment Length:113 Identity:32/113 - (28%)
Similarity:50/113 - (44%) Gaps:23/113 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   759 SNATSAATSAVA----SGTAATAATTLDEHVSRANSRRLSASKRAGL--SCSNCHTTHTSL-WRR 816
            ||.|:.....|.    ||:.|       :|....|:....|..|.|:  :|..|....||| ||.
Yeast    10 SNGTAFKKVPVQLLLNSGSEA-------QHGLPRNADSQPARPRTGITRTCGQCGEIKTSLQWRE 67

  Fly   817 NPAGEP-VCNACGLYYKLHSVPRPLTMK--KDTIQKRKRKPKGTKSEK 861
            .|.|.. :||||||::      |.|.::  :...::...:.|||.:::
Yeast    68 GPNGAACLCNACGLFF------RKLILRFGRAAAKRYMEQIKGTGTKR 109

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 19/54 (35%)
ZnF_GATA 802..853 CDD:238123 17/54 (31%)
GAT4NP_012278.3 ZnF_GATA 52..108 CDD:238123 20/61 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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