DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and Gata3

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_579827.1 Gene:Gata3 / 85471 RGDID:621250 Length:444 Species:Rattus norvegicus


Alignment Length:481 Identity:119/481 - (24%)
Similarity:167/481 - (34%) Gaps:166/481 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   549 LQQQQQQHHHNQ--------------------HQHHNSSSSSPGP---AGLHHSSSSAATAAAVA 590
            :|:....||.:|                    ..||.:|..:..|   ..:||.|....:....|
  Rat    72 VQRYPPTHHGSQVCRPPLLHGSLPWLDGGKALSSHHTASPWNLSPFSKTSIHHGSPGPLSVYPPA 136

  Fly   591 AATAAVNGHNS---------SLEDGYGSPRSSHSGGGGGGTLPAFQRIAY----PNSGSVERYAP 642
            ::::...||:|         ..:|....|..|..|..|.......:.:.|    |:|..:|    
  Rat   137 SSSSLAAGHSSPHLFTFPPTPPKDVSPDPSLSTPGSAGSARQDEKECLKYQVQLPDSMKLE---- 197

  Fly   643 ITNYRGQNDTWFDPLSYATSSSGQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVD 707
            .::.||...|    |..|:||                       |............:.::|...
  Rat   198 TSHSRGSMTT----LGGASSS-----------------------AHHPITTYPPYVPEYSSGLFP 235

  Fly   708 PGTFLSASASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPGSNATSAAT-SAVAS 771
            |.:.|..|                |..|......:::::|.|.    .|....|||... ....:
  Rat   236 PSSLLGGS----------------PTGFGCKSRPKARSSTEGR----ECVNCGATSTPLWRRDGT 280

  Fly   772 GTAATAATTLDEHVSRAN------SRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLY 830
            |.....|..|...::..|      .|||||::|||.||:||.||.|:|||||..|:|||||||||
  Rat   281 GHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLY 345

  Fly   831 YKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVVLDSSQM 895
            ||||::.|||||||:.||.|.|| ..:||:|.| |..:||....:|.|.                
  Rat   346 YKLHNINRPLTMKKEGIQTRNRK-MSSKSKKCK-KVHDALEDFPKSSSF---------------- 392

  Fly   896 DVNDDMKPQLDLKPYNSYSSQPQQQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSP-SAMSHQ 959
                                                     :.||.|.|....:.:|| |..||.
  Rat   393 -----------------------------------------NPAALSRHMSSLSHISPFSHSSHM 416

  Fly   960 HQT----HPHQQQQQQLCSGLDMSPN 981
            ..|    ||.        |||...|:
  Rat   417 LTTPTPMHPP--------SGLSFGPH 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123 36/50 (72%)
Gata3NP_579827.1 ZnF_GATA 263..313 CDD:238123 13/49 (27%)
ZnF_GATA 317..367 CDD:238123 36/49 (73%)

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