DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and ARR3

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001322268.1 Gene:ARR3 / 842288 AraportID:AT1G59940 Length:323 Species:Arabidopsis thaliana


Alignment Length:162 Identity:34/162 - (20%)
Similarity:60/162 - (37%) Gaps:52/162 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   870 LNAIMESGSLVTNCHNVGVVLDSSQMDVNDDMKPQLD-----------LKPYNSYSSQPQQQLPQ 923
            |..|.||    |:...|.||:.||     :::..::|           |||.         :|..
plant   198 LKKIKES----TSFKEVPVVIMSS-----ENVMTRIDRCLEEGAEDFLLKPV---------KLAD 244

  Fly   924 YQQQQQLLMADQHSSAASSPHSMGSTSLSPSAMSHQHQTHPHQQQQQQLCSGLDMSPNSNYQMSP 988
            .::.:..|..|...:|..:...: :|...|..:|                :...|..:.:...||
plant   245 VKRLRSYLTRDVKVAAEGNKRKL-TTPPPPPPLS----------------ATSSMESSDSTVESP 292

  Fly   989 LNMQQHQQQQSCSMQHSPSTPTSIFNTP--SP 1018
            |:|...:.    |:..||.:.||:.::|  ||
plant   293 LSMVDDED----SLTMSPESATSLVDSPMRSP 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123
ARR3NP_001322268.1 REC_typeA_ARR 127..248 CDD:381119 15/67 (22%)
Blue background indicates that the domain is not in the aligned region.

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