DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and RR19

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001185179.1 Gene:RR19 / 841342 AraportID:AT1G49190 Length:622 Species:Arabidopsis thaliana


Alignment Length:440 Identity:92/440 - (20%)
Similarity:147/440 - (33%) Gaps:110/440 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   839 PLTMKKDTIQKRKRKPKGTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVVLDSSQMDVNDDMKP 903
            |:..:.:...|...||:.|.:|           .|....|.:......|.:.|.||:...|.|  
plant   223 PIMNQDNMFNKAPPKPRMTWTE-----------VIQPVQSNLVQTKEFGQLNDYSQIMNQDSM-- 274

  Fly   904 QLDLKPYNSYSSQPQQQLPQYQQ--QQQLLMADQHSSAASSPHSMGSTSLSPSAMSHQHQTHPH- 965
                  ||..:::||....:..|  |..|:.|::.|.......||...|     |.::..|:|. 
plant   275 ------YNKAATKPQLTWTEEIQPVQSGLVQANEFSKVNGYSQSMNQDS-----MFNKSATNPRL 328

  Fly   966 ------QQQQQQLCSGLDMSPNSNYQ--MSPLNMQQHQQQQSCSMQHSPSTPTSIFNTPSPTHQL 1022
                  |..|..|....:.|..|:|.  |:..||.....::       |....|....|..:|.:
plant   329 TWNELLQPVQSDLVQSNEFSQFSDYSQIMNEDNMFNKAAKK-------PRMTWSEVFQPVQSHLV 386

  Fly  1023 HNNN-NNNNNSSIFNNNNNNNSSSNENNNK------------LIQKYLQAQQLSSSSNSGSTSDH 1074
            ..:. :.::..||..|..|...:..:...|            |.||:|:|.::......   ::.
plant   387 PTDGLDRDHFDSITINGGNGIQNMEKKQGKKPRKPRMTWTEELHQKFLEAIEIIGGIEK---ANP 448

  Fly  1075 QLLAQLLPNSITAAAAAAAAAAAAAI--KTEALSLTSQANCSTASAGLMVTSTP--------TTA 1129
            ::|.:.|..........:..|:...:  ||..|::..:.|       |.....|        .||
plant   449 KVLVECLQEMRIEGITRSNVASHLQVKKKTHTLNIKHRIN-------LEENQIPQQTQGNGWATA 506

  Fly  1130 SSTLSSLSHSNIISLQNPYHQAGMTLCKPTRPSPPYYLTPEEDEQPALIKMEEMDQSQQQQQQQQ 1194
            ..||:.       |||      |......|.||   ||.    ..||     .::|.||.|.|..
plant   507 YGTLAP-------SLQ------GSDNVNTTIPS---YLM----NGPA-----TLNQIQQNQYQNG 546

  Fly  1195 HQQQQHGEIMLSRSASLD--EHYELAAFQRHQQQQQQLQQQTAALLGQHE 1242
            .....:.:|:.:....|.  :|        |.|||.|...|...|:...|
plant   547 FLTMNNNQIITNPPPPLPYLDH--------HHQQQHQSSPQFNYLMNNEE 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123 2/13 (15%)
RR19NP_001185179.1 REC_typeB_ARR-like 36..150 CDD:381121
myb_SHAQKYF 420..474 CDD:130620 8/56 (14%)
Blue background indicates that the domain is not in the aligned region.

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