DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and PRR3

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001190575.1 Gene:PRR3 / 836132 AraportID:AT5G60100 Length:522 Species:Arabidopsis thaliana


Alignment Length:253 Identity:53/253 - (20%)
Similarity:86/253 - (33%) Gaps:73/253 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 HNNSTSSAGG---DSPSSSHALSTLQSFTQLTSATQRDSLSPENDAYFAAAQLGSSLQNSSVYAG 505
            |.|.:.|:||   ....|.:...|..|:|:..|.|:  |.||.|....|..:.| :.:|...:..
plant   249 HRNESGSSGGLSNQDGGSDNGSGTQSSWTKRASDTK--STSPSNQFPDAPNKKG-TYENGCAHVN 310

  Fly   506 SL------LTQTANGIQYGMQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHHNQHQHH 564
            .|      ..|...|.|.||....:.:       .....:::.::..|.|::......:  ....
plant   311 RLKEAEDQKEQIGTGSQTGMSMSKKAE-------EPGDLEKNAKYSVQALERNNDDTLN--RSSG 366

  Fly   565 NSSSSSPGPAG----------------------------LHHSSSSA-------ATAAAVAAA-- 592
            ||...|..|:.                            |.||:.||       ||:|..|..  
plant   367 NSQVESKAPSSNREDLQSLEQTLKKTREDRDYKVGDRSVLRHSNLSAFSKYNNGATSAKKAPEEN 431

  Fly   593 TAAVNGHNSSLEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGS---VERYAPITNYR 647
            ..:.:.|:|.:....||..||.:        |..|:    :|||   .:|.|.:..:|
plant   432 VESCSPHDSPIAKLLGSSSSSDN--------PLKQQ----SSGSDRWAQREAALMKFR 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123
PRR3NP_001190575.1 psREC_PRR 66..169 CDD:381120
MSCRAMM_ClfA <233..454 CDD:468110 45/216 (21%)
CCT 469..511 CDD:461849 3/9 (33%)
Blue background indicates that the domain is not in the aligned region.

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