DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and APRR4

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_199735.1 Gene:APRR4 / 834984 AraportID:AT5G49240 Length:292 Species:Arabidopsis thaliana


Alignment Length:134 Identity:26/134 - (19%)
Similarity:51/134 - (38%) Gaps:39/134 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 RQAVTTANA--SATSTSTVTAATEIATATASDTAATSEAAIDDDPSAINTNNNNNNSKAQNDASE 197
            |::|.|..|  :|...|:....:.|.....|..::..||.::::      :.:::|.:|  .||.
plant   164 RRSVVTGEAEKAAGEKSSSVGDSTIRNPNKSKRSSCLEAEVNEE------DRHDHNDRA--CASS 220

  Fly   198 SVKTKVI---SYHQS-----------------------EDQQQQQQQQAQIYEQQQQFLSQQLIS 236
            :.|.:|:   ..||:                       .|...::...:.:   |..||...:|.
plant   221 AKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVASHL---QVTFLIYNIIV 282

  Fly   237 HHQQ 240
            |.||
plant   283 HFQQ 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123
APRR4NP_199735.1 REC_typeB_ARR-like 44..158 CDD:381121
PLN03162 <163..>272 CDD:178707 19/118 (16%)
myb_SHAQKYF 223..278 CDD:130620 8/57 (14%)
Blue background indicates that the domain is not in the aligned region.

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