DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and GATA27

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_199525.2 Gene:GATA27 / 834760 AraportID:AT5G47140 Length:470 Species:Arabidopsis thaliana


Alignment Length:430 Identity:91/430 - (21%)
Similarity:151/430 - (35%) Gaps:133/430 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   803 CSNCHTTHTSLWRRNPAGEPV-CNACGL----------YYKLHS------------VPRPLTMKK 844
            |.:|..|.|.|||..|..:|| |||||.          |..||:            ..:.:.:|.
plant     7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTPLHARAEGDETEIEDHRTQTVMIKG 71

  Fly   845 DTIQKR--KRKP-------KGTKSE-----KSKSKSKNALNAIMESGSLVTNCHN---------- 885
            .::.|:  ||||       |....|     |.|:..:.|.|. ..|||:|:|..:          
plant    72 MSLNKKIPKRKPYQENFTVKRANLEFHTGFKRKALDEEASNR-SSSGSVVSNSESCAQSNAWDST 135

  Fly   886 --------VGVVLDSSQMD-VNDDMKPQLDLKPYNSYSSQPQQQL------PQYQQQQQLLMADQ 935
                    ||....:|.:: :..|:...|..:..:..|...::.|      |.......:||.|.
plant   136 FPCKRRTCVGRPKAASSVEKLTKDLYTILQEQQSSCLSGTSEEDLLFENETPMLLGHGSVLMRDP 200

  Fly   936 HSSA-------------ASSPHSMGSTSLSPSAMSHQHQTHPHQQ----QQQQLCSGLDMSPNSN 983
            ||.|             :|...|:.|......||..:.......|    ....||| :|:....|
plant   201 HSGAREEESEASSLLVESSKSSSVHSVKFGGKAMKQEQVKRSKSQVLGRHSSLLCS-IDLKDVFN 264

  Fly   984 YQMSPLNMQQHQQQQSCSMQHSPSTPTSIFNTPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNEN 1048
            :.....|..:.:||:  .|:..|              |:.:.:..::..|:|      .||..:.
plant   265 FDEFIENFTEEEQQK--LMKLLP--------------QVDSVDRPDSLRSMF------ESSQFKE 307

  Fly  1049 NNKLIQKYLQAQQLSSSSNSGSTSDHQLLAQLL---PNSITAAAAAAAAAAAAAIKTEALSLTSQ 1110
            |..|.|:.:......::|:.....|.:.||:|.   ||.      :....:...:|...:.    
plant   308 NLSLFQQLVADGVFETNSSYAKLEDIKTLAKLALSDPNK------SHLLESYYMLKRREIE---- 362

  Fly  1111 ANCSTASAGLMVTSTPTTASSTLSSLSHSN---IISLQNP 1147
             :|             .|.:|.:||||.||   :::::.|
plant   363 -DC-------------VTTTSRVSSLSPSNNNSLVTIERP 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123 21/74 (28%)
GATA27NP_199525.2 ZnF_GATA 6..54 CDD:238123 18/46 (39%)
DEUBAD_NFRKB 252..>322 CDD:472945 18/92 (20%)

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