DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and PRR7

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_568107.1 Gene:PRR7 / 831793 AraportID:AT5G02810 Length:727 Species:Arabidopsis thaliana


Alignment Length:593 Identity:98/593 - (16%)
Similarity:187/593 - (31%) Gaps:182/593 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 SSLESARSQALTSVVSETARQAVTTANAS---ATSTSTVTAATEIATATASDTAATSEAA-IDDD 176
            |..||...|...||.|::.:::...:.:|   ...:..:.|:...:..:.:.::.|.:|. :||.
plant   206 SGSESGTHQTQKSVKSKSIKKSDQDSGSSDENENGSIGLNASDGSSDGSGAQSSWTKKAVDVDDS 270

  Fly   177 PSAINTNNNNNNSKAQNDASESVKTKVISYHQSEDQQQQQQQQAQIYEQQQQFLSQQLISHHQQE 241
            |.|:                 |:..:|.|            ..||:.....:|.|.||::...::
plant   271 PRAV-----------------SLWDRVDS------------TCAQVVHSNPEFPSNQLVAPPAEK 306

  Fly   242 QHQQAQQQQHQQVVQEQHQASWLAYDLTSGSAAAAAAAAAAASHPHLFGQFSYPPSHHTPTQLYE 306
                 :.|:|....:          |:|.|.....:.....        ..:..|..       |
plant   307 -----ETQEHDDKFE----------DVTMGRDLEISIRRNC--------DLALEPKD-------E 341

  Fly   307 HYPSTDPIMRNNFAF------YSVYTG------------------GGGGVGVGMTSHEHLAAAAA 347
            ....|..|||.:.:|      :.:..|                  .||.....|:||        
plant   342 PLSKTTGIMRQDNSFEKSSSKWKMKVGKGPLDLSSESPSSKQMHEDGGSSFKAMSSH-------- 398

  Fly   348 AAAAVAQGTTPNIDEVIQDTLKDECFEDGHSTDYHVLTSVSDMHTLKDSSPYALTHEQLHQQQHH 412
                            :||..:.|      :.:.|:.|..::..::|      ::.|.:|.:   
plant   399 ----------------LQDNREPE------APNTHLKTLDTNEASVK------ISEELMHVE--- 432

  Fly   413 HQQQLHHHQQQQQQLYHQQQQQQQQQQ-----HHHHHNNSTSSAGGDSPSSSHALSTLQSFTQLT 472
            |..:.|...:....|....:...::.:     .::..:|:...:||:..|           |.|.
plant   433 HSSKRHRGTKDDGTLVRDDRNVLRRSEGSAFSRYNPASNANKISGGNLGS-----------TSLQ 486

  Fly   473 SATQRDSLSPENDAYFAAAQLGSSL-QNSSVYAGS----LLTQTANGIQYGMQSPNQTQAHLQQQ 532
            ....:|.:.....||...:.:..|| .|...:.||    :.:.|.|.......:|..:.|.....
plant   487 DNNSQDLIKKTEAAYDCHSNMNESLPHNHRSHVGSNNFDMSSTTENNAFTKPGAPKVSSAGSSSV 551

  Fly   533 HHQQQQ----QQHQQHQQQQL-------------------QQQQQQHHHNQHQHHNSSSSSPGPA 574
            .|...|    ..|..|....|                   .:..:.:::..:...|.|.|..|  
plant   552 KHSSFQPLPCDHHNNHASYNLVHVAERKKLPPQCGSSNVYNETIEGNNNTVNYSVNGSVSGSG-- 614

  Fly   575 GLHHSSSSAATAAAVAAATAAVNGHNSSLEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVER 639
              |.|:....::..:.|....:...|.:.::|.|....|.||.|.|       .:|..|..| :|
plant   615 --HGSNGPYGSSNGMNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSG-------NLADENKIS-QR 669

  Fly   640 YAPITNYR 647
            .|.:|.:|
plant   670 EAALTKFR 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123
PRR7NP_568107.1 psREC_PRR 80..183 CDD:381120
CCT 669..711 CDD:461849 4/9 (44%)
Blue background indicates that the domain is not in the aligned region.

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