DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and RR20

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001319821.1 Gene:RR20 / 825441 AraportID:AT3G62670 Length:426 Species:Arabidopsis thaliana


Alignment Length:469 Identity:89/469 - (18%)
Similarity:141/469 - (30%) Gaps:166/469 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   857 TKSEK-------SKSKSKNALNAI------MESGS-----LVTNCHNVGVVL------DSSQMDV 897
            |||.:       |.|..||.:...      .|||.     |:.|.|.:.:|:      |.:.:|.
plant    38 TKSNRVLLVGADSNSSLKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDINGLDA 102

  Fly   898 NDDMKPQLDLKPY---NSYSSQPQQQLPQY---------QQQQQLLMADQH-------SSAASSP 943
            .:.:..|:||...   :.|..:...:..:|         ..::.:.:..:|       .|....|
plant   103 LNIIGKQMDLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKRMSKSGLDKP 167

  Fly   944 HSMGSTSLSPSAMSHQHQTHPHQQQQQQLCSGLDMSPNSNYQMSPLNMQQHQQQQSCSMQHSPST 1008
            ...|:....|.......|.:.::..::                ...|...|::::      ||:.
plant   168 GESGTVESDPDEYDDLEQDNLYESNEE----------------GSKNTCDHKEEK------SPTK 210

  Fly  1009 PTSIFNTPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNSGSTSD 1073
            ...:..||    :||:.         |........|..:...|.|.||:|.:.........:.:.
plant   211 KPRMQWTP----ELHHK---------FEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVAS 262

  Fly  1074 HQLLAQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCSTASAGLMVTSTPTTASSTLSSLSH 1138
            |  |.:...:|                |........|.:....:||..||   ..||.||.| ||
plant   263 H--LQKYRQSS----------------KKTCTPQEPQEDFVWGNAGPDVT---LAASKTLLS-SH 305

  Fly  1139 SNIISLQN--------------PYHQAGMTLCKPTRPSPPYYLTPEEDEQPALIKMEEMDQSQQQ 1189
            :....|.|              ||..   |.|.|...:..:...|.          ..:||.|.|
plant   306 ATPSYLINNQAAPRGSYFMNNIPYPS---TSCLPVNNNNCFMTNPS----------TYIDQFQHQ 357

  Fly  1190 QQQQQHQQQQHGEIMLSRSASLDEHYELAAFQRHQQQQQQLQQQTAALLGQHEQHVTNYAMHK-- 1252
            .|||                           |:|||.|..|...:|.|..|..:||.:.||..  
plant   358 LQQQ---------------------------QQHQQYQSTLNSISAMLTKQESRHVPSSAMENSE 395

  Fly  1253 ----------FGVD 1256
                      ||:|
plant   396 PLMIYNSNLPFGID 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123
RR20NP_001319821.1 REC_typeB_ARR-like 43..155 CDD:381121 19/111 (17%)
myb_SHAQKYF 211..268 CDD:130620 13/71 (18%)
Blue background indicates that the domain is not in the aligned region.

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