DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srp and RR16

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001189722.1 Gene:RR16 / 818662 AraportID:AT2G40670 Length:165 Species:Arabidopsis thaliana


Alignment Length:128 Identity:24/128 - (18%)
Similarity:43/128 - (33%) Gaps:42/128 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1002 MQHSPSTPTSIFNTPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSSSS 1066
            |..|..:.:|:.:..:..|.||:.::...:....::|             ||             
plant     1 MNSSGGSCSSLMDVVAYDHHLHHGHDEELHVLAVDDN-------------LI------------- 39

  Fly  1067 NSGSTSDHQLLAQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQ------ANCSTASAGLMVT 1123
                  |.:|:.:||  .|:......|..|..|:  |.|.|..|      ..|:.....|::|
plant    40 ------DRKLVERLL--KISCCKVTTAENALRAL--EYLGLGDQNQHIDALTCNVMKVSLIIT 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123
RR16NP_001189722.1 REC_typeA_ARR 31..156 CDD:381119 18/98 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.