DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and COL3

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_180052.1 Gene:COL3 / 817016 AraportID:AT2G24790 Length:294 Species:Arabidopsis thaliana


Alignment Length:197 Identity:37/197 - (18%)
Similarity:59/197 - (29%) Gaps:87/197 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   764 AATSAVASGTAATAATTLDEHVSRANSRRLSASKRAGLSCSNC----HTT------HTSLWRRNP 818
            |::|.:.....:||||..    .||:         |...|.:|    ||.      |..:|    
plant     2 ASSSRLCDSCKSTAATLF----CRAD---------AAFLCGDCDGKIHTANKLASRHERVW---- 49

  Fly   819 AGEPVCNACGLYYKLHSVPRPLTMKKDTI-----------------QKRKRKP-----KGTKSEK 861
                :|..|      ...|..:|.|.|..                 ::.:|.|     ......|
plant    50 ----LCEVC------EQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAK 104

  Fly   862 SKSKSKNALN----------AIMESGSLVTNCH------------------NVGVVLDSSQMDVN 898
            |.|.|.|.::          .:.:.|..:||..                  |.|||...:::.:|
plant   105 SASSSVNFVDEDGGDVTASWLLAKEGIEITNLFSDLDYPKIEVTSEENSSGNDGVVPVQNKLFLN 169

  Fly   899 DD 900
            :|
plant   170 ED 171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123 12/77 (16%)
COL3NP_180052.1 Bbox1_BBX-like 7..50 CDD:380879 13/63 (21%)
Bbox1_BBX-like 50..93 CDD:380879 7/48 (15%)
CCT 229..271 CDD:461849
Blue background indicates that the domain is not in the aligned region.

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