DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srp and trps1

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001171405.1 Gene:trps1 / 795613 ZFINID:ZDB-GENE-030131-8404 Length:1243 Species:Danio rerio


Alignment Length:1406 Identity:269/1406 - (19%)
Similarity:426/1406 - (30%) Gaps:462/1406 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 KSNNNKRQAG----RAATALAATTTASALAATTTAGATGSNAAANETEIAIETENGEAAT--PTA 106
            |.|...|..|    .|...||..|...    :.|.|:..|:|...:.|        |.|:  |..
Zfish     9 KKNPPLRSVGGEEEEAEAVLAGATDPE----SATTGSQNSDADREDQE--------EPASPGPNK 61

  Fly   107 AATAAAANLSSLESARSQALTSVVS-----ETARQAVTTANASATSTSTVTAATEIATATAS-DT 165
            .....::..||.|...::.|.|..:     |.....::| .||.....:.|:..|....|.| .:
Zfish    62 PDLHYSSQNSSREGTDTEPLASPTNSDPEGEEDCPKIST-RASGVIVQSCTSNGEEKDVTGSPPS 125

  Fly   166 AATSEAAIDD--DPSAI------------NTNNNN------------NNSKAQ------------ 192
            ..:|::.:|:  |.|.:            ...|.:            ::.|.|            
Zfish   126 LLSSDSPVDETLDISKVPPVTLHPQRPVGGAENAHSPLGGETGAPPASSPKLQDFKCNICGYGYY 190

  Fly   193 -NDASESVKTKVISYHQSEDQQQQQQQQAQIYEQQQQFLSQQLISHHQQEQHQQAQQQQHQQVVQ 256
             ||.::.:| ....||.....:.:|..:          |..::::.|...|. .||       .|
Zfish   191 GNDPTDLIK-HFRKYHLGLHNRTRQDAE----------LDNKILALHNMVQF-TAQ-------TQ 236

  Fly   257 EQHQASWLAYDLTSGSAAAAAAAAAAASHPHLFGQFSYPPSHHTPTQLYEHYPSTDPIMRNNFAF 321
            .:..|..|...:.|||...|.:..|:..:.....|.:...:.....:..:.........|..|..
Zfish   237 AKESARVLGQPVQSGSVVEAGSPRASVLNGTYDVQVTLAGTFIGIGRKTQDCQGNTKYFRCKFCN 301

  Fly   322 YSVYTGGGGGVGVGMTSHEHLAAAAAAAAAVAQGTTPNIDEVIQDTLKDECF------------- 373
            :: |.|..     .:...:|..|...........:..|:||......|..|.             
Zfish   302 FT-YMGSS-----SVDLEQHFLATHPNKMKSPPASNSNLDEKSSSERKGNCVPRIGADEHGKWAD 360

  Fly   374 ------EDGHSTDYHV--LTSVSDMHTLKDSSPYA-------------------LTHEQLHQQQH 411
                  ||.....|.|  .:|.|..||:...||.|                   |.|   ::::|
Zfish   361 RVAVRSEDDSVAGYSVPIRSSDSPSHTVGGDSPSAYYWCKYCSFSCEASGASKLLEH---YEKRH 422

  Fly   412 HH---QQQLHHHQQQQQQLYHQQQQQQQQQQ-------------------------------HHH 442
            .|   ::.....::.:....|.:::::..:|                               ||:
Zfish   423 GHGVVREGSPGDRKTRDGDAHLRKKEKTSEQETVVTSYNCQFCDFRYSMTHGPEVIIVAPLLHHY 487

  Fly   443 HHNNSTSSAGGDSPSSSHALSTLQSFTQLTSATQRDSLSPENDAYFAAAQLGS-----SLQNSSV 502
            ...:|....     :..|.           ....|...:||.       .||.     :.:.||.
Zfish   488 QRAHSIHKC-----TIKHC-----------PFCPRGLCTPEK-------HLGEISYPFACRKSSC 529

  Fly   503 YAGSLLTQTANGIQYGMQSPNQTQA---HLQQQ-------------HHQQQQQQHQQHQQQQLQQ 551
            ...:||..|..|  ....||...:|   ||..|             |:   ...|..|...:::.
Zfish   530 SHCALLLLTGGG--NAAPSPPAVRASVTHLCDQCPFTATDIDLLLLHY---DSAHTSHSLLEVKP 589

  Fly   552 QQQQHHHNQHQHHNSSSSSPGPAGLHHSSSSAAT---------------------------AAAV 589
            :::          .|.....|| |..|....|.|                           .:..
Zfish   590 EEE----------GSGDGGAGP-GQDHPGEYACTKCHFCTEVEEEIFRHYRRVHGCCRCRHCSFT 643

  Fly   590 AAATAAVNGHNSS--LEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDT 652
            |..|.|:..|.:|  .:|    |.........|.:.|:..||...:.|.::.|:.:..       
Zfish   644 ATDTTALLDHFNSAHCQD----PADPSCAPANGCSAPSTLRIKEESKGDLKLYSLVPP------- 697

  Fly   653 WFDPLSYATSSSGQAQ-----------LGVGVGAG---VVSNV-IRNGRAISAANAAAAAAADGT 702
              :||..|.....:||           .|..|.||   |.|.| :...||             |.
Zfish   698 --EPLPGAEMVKSEAQDEEKKSWVEALAGGAVRAGEQHVQSLVWVPKERA-------------GE 747

  Fly   703 TGRVDPGTFLSASASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPG-SNATSAAT 766
            ..|..|..|  ..|||..:.|             |.|||:......||.......| ..:.||..
Zfish   748 ILRGSPAPF--PQASLGLLNA-------------VAGGGKEPQTQKGATMLRDSTGLMFSLSADA 797

  Fly   767 SAVASGTAATAA--------TTLDEHVSRANSRRLSASKR-AGLSCSNCHTTHTSLWRRNPAGEP 822
            ....|||.|.|.        :..:...::..|:.|...:| :|:.|:||.||.|||||:|..|..
Zfish   798 KGYLSGTPAGAVEKGGQQYPSATEGKSAKEESQSLLRRRRGSGVFCANCLTTKTSLWRKNANGGY 862

  Fly   823 VCNACGLYYKLHSVPRPLTMKKDT-----IQKRKRK---PKGTKSEKSKSK-----SKNALNAIM 874
            ||||||||.||||.||||.:.|..     |::|.||   |....||:..||     |:..||   
Zfish   863 VCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPDPMPSEQVGSKQQRVNSEERLN--- 924

  Fly   875 ESGSLVTNCHNVGVVLDSSQMDVNDD---MKPQLDLKPYNSYSSQPQQQLPQYQQQQQLLMADQH 936
                        |..|:....|...|   .:.:..:| |.:|.....:..|              
Zfish   925 ------------GSPLERRTEDNGSDGSLSRAEAQVK-YEAYGPSGTKSHP-------------- 962

  Fly   937 SSAASSPHSMGSTSLSPSAMSHQHQTHPHQQQQ-----QQLCSGLDMSP------NSNYQMSPLN 990
                 ||.|..:..::.:...|:.....|..:.     ....:||.:.|      ..:.:.||:.
Zfish   963 -----SPRSTHAFLVNQTLEIHKRMPPLHMHKSPVDGGSAEGNGLSLGPQGADGKGGSERGSPIE 1022

  Fly   991 MQQHQQQQSCSMQHSPSTPTS-----IFNTPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNENNN 1050
            ......:|  :....|.:|..     ||:.|.    |||:..|..:                   
Zfish  1023 KYMRPSKQ--ASYSPPGSPIEKYQYPIFSLPF----LHNDLQNETD------------------- 1062

  Fly  1051 KLIQKYLQAQQLSSSSNSGSTSDHQLLAQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCST 1115
                 :|:.......|..|:.:.|.|.|. |||           ...:.:...|.||.......|
Zfish  1063 -----WLRFWTKYKMSVPGNAAGHYLSAG-LPN-----------PCQSFVPYPAFSLPPHFPPPT 1110

  Fly  1116 ASAGLMVTSTPTTASSTLSSLSHSNIISLQNPYHQAGMTLCKPTRPSPPYYLTPEEDEQPALIKM 1180
            ||.       |.:.:....::.||                 ||:..|.......|:...||..:|
Zfish  1111 ASG-------PESDTPLDLAMKHS-----------------KPSPTSNGALSAKEKLASPASDRM 1151

  Fly  1181 EEMDQ--------SQQQQQQQQHQQQQHGEIMLSRSASLDE 1213
            ::.::        ||.::..|..|.....:.:......|||
Zfish  1152 DDPEEERSTPKSSSQSEKVDQATQDDLSSKCVHCGIVFLDE 1192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 31/54 (57%)
ZnF_GATA 802..853 CDD:238123 31/55 (56%)
trps1NP_001171405.1 ZnF_GATA 838..881 CDD:214648 28/42 (67%)
ZnF_GATA 842..898 CDD:238123 31/55 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573873
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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