DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and zglp1

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001038914.1 Gene:zglp1 / 751739 ZFINID:ZDB-GENE-060825-359 Length:351 Species:Danio rerio


Alignment Length:117 Identity:33/117 - (28%)
Similarity:46/117 - (39%) Gaps:49/117 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   739 GGGRSKANTSGAASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRR-----LSASKR 798
            |.|||:...:   |:||                           |.:||..|||     |.:::|
Zfish   232 GAGRSRLLIT---SNYS---------------------------EELSRWRSRRSRCRSLHSAQR 266

  Fly   799 AGLS--------------CSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSV 836
            :..|              |::|.|..|.|||....|.|:|||||:.||.:.|
Zfish   267 SSSSEEESDPCSLSGSKICASCRTRKTPLWRDAEDGTPLCNACGIRYKKYRV 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123 18/49 (37%)
zglp1NP_001038914.1 GATA 285..319 CDD:425605 17/34 (50%)

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