DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srp and gata6

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001313293.1 Gene:gata6 / 58076 ZFINID:ZDB-GENE-000622-1 Length:501 Species:Danio rerio


Alignment Length:522 Identity:130/522 - (24%)
Similarity:183/522 - (35%) Gaps:166/522 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   566 SSSSSPG------------------PAGLH---------------------HSSSSAATAAAVAA 591
            |||||||                  ||..|                     |.:::..::..|..
Zfish    16 SSSSSPGSPAEQSYLNTDRRDRLRSPAPTHLDPVGSRRAEGRPLHSYVHFGHPNNALPSSDDVTL 80

  Fly   592 ATAAVNGHNSSLEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVERY--APITNYRGQNDTWF 654
            .|....|:...:..|:  ||.:|.||........:|.:|...:.|...|  .|...|...|.|  
Zfish    81 FTDLDQGNKLIISGGH--PRETHKGGLIVDPTDMYQTLAIAAAQSQAGYNDTPSAGYMHSNPT-- 141

  Fly   655 DPLSYATSSSGQ-----AQLGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSA 714
            .|:...||..|.     :.|..||..       :...|:|:.:..:..|.:              
Zfish   142 SPVYVPTSRVGTMIPNLSYLPPGVST-------QPSHAVSSHSVWSQPAPE-------------- 185

  Fly   715 SASLSAMAAESGGDF-YKPNSFNVGGGGRSKANT----------------SGAASS----YSCPG 758
            |.|.|..:..:...| |.|:.....|..|..:.|                ||:..|    |..|.
Zfish   186 SPSYSTGSPHTSNRFHYSPSPPMNNGTSRDTSYTTPLNVNSRDQYLSRPISGSYPSPYPPYVTPQ 250

  Fly   759 SNATSAATSA----------VASGTAATA-----ATTLDEHV----------------------- 785
            .:...||..|          :.|.:|..|     ...|:|.|                       
Zfish   251 LSQLPAAWPAGPFENSMLHSLQSRSAPLAIRGPNGDLLEEMVESRECVNCGSMSTPLWRRDGTGH 315

  Fly   786 ---------SRAN---------SRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYK 832
                     |:.|         .:|:|:|:|.||||:||.|:.|:|||||..|||||||||||.|
Zfish   316 FLCNACGLYSKMNGLSRPLIKPQKRMSSSRRIGLSCANCQTSTTTLWRRNAEGEPVCNACGLYTK 380

  Fly   833 LHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVVLDSSQMDV 897
            ||.|||||.|||:.||.||||||.....|..|.|.:.......|.|           .:|.:...
Zfish   381 LHGVPRPLAMKKEGIQTRKRKPKSLSKVKGSSGSSSVPMTPTSSSS-----------SNSEECTK 434

  Fly   898 NDDMKPQLDLKPYNSYSSQPQQQLP-------QYQQQQQLLMADQHSSAASSPHSMGSTSLSPSA 955
            |.....|:.:...||.:...|..:|       ::..|:.|......:|:|....|:...|..|.|
Zfish   435 NSPSSTQVPVTSVNSSTLVGQVDVPGTTGSMVKFPGQESLYTNVGLTSSADVASSVRGDSWCPMA 499

  Fly   956 MS 957
            ::
Zfish   500 LA 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 36/48 (75%)
ZnF_GATA 802..853 CDD:238123 37/50 (74%)
gata6NP_001313293.1 GATA-N 112..285 CDD:283099 38/195 (19%)
ZnF_GATA 295..337 CDD:214648 2/41 (5%)
ZnF_GATA 296..340 CDD:238123 2/43 (5%)
ZnF_GATA 346..395 CDD:214648 36/48 (75%)
ZnF_GATA 350..401 CDD:238123 37/50 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573869
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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