DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and gata1b

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:XP_021334219.1 Gene:gata1b / 564960 ZFINID:ZDB-GENE-081104-43 Length:372 Species:Danio rerio


Alignment Length:332 Identity:91/332 - (27%)
Similarity:126/332 - (37%) Gaps:125/332 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   566 SSSSS------PGPAGLHHSSSSAATAAAVAAATA------AVNGHNSSLEDGYGSPRSSHSGGG 618
            ||.||      ..|:..|.|:.|.|::::.::::|      :|.|..||      .|        
Zfish    84 SSGSSLTNYFPSSPSSWHSSAFSKASSSSFSSSSARPEQKESVKGERSS------PP-------- 134

  Fly   619 GGGTLPAFQRIA--YPNSGSVE-RYAPITNYRGQNDTWFDPLSYATS------------SSGQAQ 668
            |||..|....::  ||:|.|.: .|:|   |.|....:...|.||.:            |...|:
Zfish   135 GGGLFPLNSSLSGVYPHSHSTKTHYSP---YGGHTQDYSSSLLYAPATFTPKLCSKMNFSPLDAR 196

  Fly   669 LGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSASASLSAMAAESGGDFYKPN 733
            ..|..|                |.|......|||      |.:|..:..|          ::|.|
Zfish   197 ECVNCG----------------ATATPLWRRDGT------GHYLCNACGL----------YHKMN 229

  Fly   734 SFNVGGGGRSKANTSGAASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLSASKR 798
            ..|                                              ..:.|...|.: .|||
Zfish   230 GQN----------------------------------------------RPLIRPKKRPV-VSKR 247

  Fly   799 AGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRK--PKGTKSEK 861
            .|..|:||.|:.|:|||||.:|||||||||||:|||:|.|||.|||:.||.|.||  .|..|.:|
Zfish   248 IGTQCANCQTSTTTLWRRNSSGEPVCNACGLYFKLHNVNRPLAMKKEGIQTRNRKVSSKNRKGKK 312

  Fly   862 SKSKSKN 868
            ..:..:|
Zfish   313 FSTMEEN 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 33/48 (69%)
ZnF_GATA 802..853 CDD:238123 34/50 (68%)
gata1bXP_021334219.1 ZnF_GATA 197..243 CDD:238123 15/123 (12%)
ZnF_GATA 251..302 CDD:238123 34/50 (68%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573863
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.930

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