Protein Alignment srp and Gata4

DIOPT Version :9

• Sequence 1: NP_732100.2
• Gene: srp / 41944
• FlyBaseID: FBgn0003507
• Length: 1264
• Species: Drosophila melanogaster
• Sequence 2: XP_006252251.1
• Gene: Gata4 / 54254
• RGDID: 2665
• Length: 441
• Species: Rattus norvegicus
• Alignment Length: 505
• Identity: 143/505 - (28%)
• Similarity: 177/505 - (35%)
• Gaps: 196/505 - (38%)

  Fly   607 YGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVERYAPI----TNYRGQNDTWFDPLSY-------- 659
            :|.|..::..||.|    ||...|...|..|  |.|.    ::..|        |||
  Rat    11 HGPPPGAYEAGGPG----AFMHSAGAASSPV--YVPTPRVPSSVLG--------LSYLQGGGSGA 61

  Fly   660 ---ATS--SSGQAQLGVGVG----------AGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPG 709
               |||  |||....|.|.|          ||.      .|.|.:....:...:..||||.:
  Rat    62 ASGATSGGSSGAGPSGAGPGTQQGSPGWSQAGA------EGAAYTPPPVSPRFSFPGTTGSL--- 117

  Fly   710 TFLSASASLSAMAAESGGDFYKPNSFNVGGG--GRSKANTSGAASSYSCPGSNATSAATSAVASG 772
                |:|:.:|.|.|:..  |..:....|.|  ||.:....|.|.|||.| ..|..|...|..:.
  Rat   118 ----AAAAAAAAAREAAA--YSSSGGAAGAGLAGREQYGRPGFAGSYSSP-YPAYMADVGASWAA 175

  Fly   773 TAATAATTLDEHV-----SRAN------------------------------------------- 789
            .||.:|...|..|     .|||
  Rat   176 AAAASAGPFDSPVLHSLPGRANPARHPNLVDMFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNA 240

  Fly   790 -----------------SRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVP 837
                             .||||||:|.||||:||.||.|:|||||..|||||||||||.|||.||
  Rat   241 CGLYHKMNGINRPLIKPQRRLSASRRVGLSCANCQTTTTTLWRRNAEGEPVCNACGLYMKLHGVP 305

  Fly   838 RPLTMKKDTIQKRKRKPKGTKSEK------------SKSKSKNALNAIMESGSLVTNCHNVGVVL 890
            |||.|:|:.||.||||||.....|            |...|.|:.||...|.|
  Rat   306 RPLAMRKEGIQTRKRKPKNLNKSKTPAGPPGESLPPSSGASSNSSNATSSSSS------------ 358

  Fly   891 DSSQMDVNDDMKPQLDLKPYNSYSSQPQQQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSPSA 955
                   :::|:|   :|.....||       .|          .|||:.|...|        :.
  Rat   359 -------SEEMRP---IKTEPGLSS-------HY----------GHSSSMSQTFS--------TV 388

  Fly   956 MSHQHQTHPHQQQQQQLCSGLDMSPNSNYQMSPLNMQQHQQQQSCSMQHS 1005
            ..|....||       :.|.|.:||..  ..||:.    |..|:.|.|.|
  Rat   389 SGHGSSIHP-------VLSALKLSPQG--YPSPVT----QTSQASSKQDS 425

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
srp	NP_732100.2	ZnF_GATA	798..847	CDD:214648	36/48 (75%)
		ZnF_GATA	802..853	CDD:238123	37/50 (74%)
Gata4	XP_006252251.1	GATA-N	1..204	CDD:283099	60/222 (27%)
		ZnF_GATA	212..257	CDD:214648	0/44 (0%)
		ZnF_GATA	216..266	CDD:238123	6/49 (12%)
		ZnF_GATA	268..315	CDD:214648	35/46 (76%)
		ZnF_GATA	270..321	CDD:238123	37/50 (74%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5641
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000130
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	2.810