Protein Alignment srp and pnr

DIOPT Version :9

• Sequence 1: NP_732100.2
• Gene: srp / 41944
• FlyBaseID: FBgn0003507
• Length: 1264
• Species: Drosophila melanogaster
• Sequence 2: NP_476685.1
• Gene: pnr / 44849
• FlyBaseID: FBgn0003117
• Length: 540
• Species: Drosophila melanogaster
• Alignment Length: 677
• Identity: 177/677 - (26%)
• Similarity: 240/677 - (35%)
• Gaps: 243/677 - (35%)

  Fly   550 QQQQQQHHHNQHQHHNSSSSSPGPAGLHHSSSSAATAAAVAAATAAVNGHNSSLEDGYGSPRSSH 614
            ||..:.:.|....:.|.:.|         ::|::.:|:|.|...|||..::||
  Fly    14 QQSTRDYPHFSGDYQNVTLS---------AASASTSASASATHVAAVKMYHSS------------ 57

  Fly   615 SGGGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDTWFDPLSYATSSSGQAQLGVGVGAGVVS 679
                                 :|..|..:.               |..|:..|.:||||
  Fly    58 ---------------------AVAAYTDLA---------------AAGSAASAGVGVGV------ 80

  Fly   680 NVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSASASLSAMAAESGG----DFYKPNSFNVGGG 740
                :|....|.||.....::.....|  .....::|:.:|...|..|    .||.||:..:.|.
  Fly    81 ----SGYHQQAVNAPVYVPSNRQYNHV--AAHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGS 139

  Fly   741 GRSKANTSG--AASSYSCPGSNATSAATSAVASGTAATA-------------ATTLDEHVSRAN- 789
            .||..:.||  .:|.|..............|..|..:|.             |..|...::..|
  Fly   140 WRSAYDPSGFQRSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNR 204

  Fly   790 -----SRRL---SASKRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDT 846
                 |:||   :|::|.||.|:||.|..|:|||||..|||||||||||||||.|.|||.|:||.
  Fly   205 PLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAMRKDG 269

  Fly   847 IQKRKRKPKGTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVVLDSSQMDVNDDMKPQLDLKPYN 911
            ||.||||||       |:.|.:|:.|...||:             .|.::...:.|.:.||||
  Fly   270 IQTRKRKPK-------KTGSGSAVGAGTGSGT-------------GSTLEAIKECKEEHDLKP-- 312

  Fly   912 SYSSQPQQQLPQYQQQQQLLMADQHSSAASSPHSMGSTSLSPSAMSHQHQTHPHQQQQQQLCSGL 976
                              .|..::||.:.........||.|.:.|.| |.....||||||
  Fly   313 ------------------SLSLERHSLSKLHTDMKSGTSSSSTLMGH-HSAQQQQQQQQQ----- 353

  Fly   977 DMSPNSNYQMSPLNMQQHQQQQSCSMQHSPSTPTSIFNTPSPTHQLHNNNNNNNNSSIFNNNNNN 1041
                          .||.||||.....|....|.....|....||.|.::..:::.
  Fly   354 --------------QQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSG--------- 395

  Fly  1042 NSSSNENNNKLIQKYLQAQQL-----------SSSSNSGSTS---DHQLLAQLLPNS-------- 1084
                        |.:|.|:.|           .|||..||.|   .|......|.|.
  Fly   396 ------------QAHLSARHLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQH 448

  Fly  1085 -----------ITAAAA-----AAAAAAAAAIKTEALSLTSQ---ANC--------------STA 1116
                       :|||||     ||||.||..:|||| |.|:.   .||              :||
  Fly   449 HHHLGGTHGHHVTAAAAHHHFHAAAAVAAYGVKTEA-SATNYDYVNNCYFGGTFGALGGAATTTA 512

  Fly  1117 SAGLMVTSTPTTASSTLSSLSHS-NII 1142
            .||        .|:|.|:...|. |:|
  Fly   513 MAG--------GAASELAGYHHQHNVI 531

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
srp	NP_732100.2	ZnF_GATA	798..847	CDD:214648	35/48 (73%)
		ZnF_GATA	802..853	CDD:238123	36/50 (72%)
pnr	NP_476685.1	ZnF_GATA	164..212	CDD:214648	7/47 (15%)
		ZnF_GATA	168..212	CDD:238123	7/43 (16%)
		ZnF_GATA	223..270	CDD:214648	34/46 (74%)
		ZnF_GATA	226..276	CDD:238123	36/49 (73%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45438449
Domainoid	1	1.000	69	1.000	Domainoid score	I9610
eggNOG	1	0.900	-	-		E1_COG5641
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000130
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR10071
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1745
SonicParanoid	0	0.000	Not matched by this tool.
	7	6.870