DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and gata2b

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:XP_009300818.1 Gene:gata2b / 436962 ZFINID:ZDB-GENE-040718-440 Length:428 Species:Danio rerio


Alignment Length:484 Identity:135/484 - (27%)
Similarity:186/484 - (38%) Gaps:131/484 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   478 DSLSPENDAYFAAAQLGSSLQNSSVY--AGSLLTQTANGIQYGMQSPNQTQAHLQQQHHQQQQQQ 540
            ||:||.       |.||   .:||.|  .|:.|.|           |::....|.....|.....
Zfish    24 DSVSPH-------AGLG---HHSSGYMEPGAPLLQ-----------PDEVDVFLSHLDSQGNPYY 67

  Fly   541 HQQHQQQQLQQQQ-----------QQHHHNQH---------------QHHNS-SSSSPGPAGLHH 578
            |....:.::...|           :.|..|.|               |||.| :.|..|.|.|| 
Zfish    68 HTHGSRARMSYSQTHARLTGGSMCRPHLINTHGLPLLDNSKSTFSTAQHHGSWTVSHLGKAVLH- 131

  Fly   579 SSSSAATAAAVAAATAAVNGHNSSLEDGYGSPRSSHSGGGGGGTLPAFQRIAYPNSGSVERYA-P 642
                       :|...:.||    |..|.|:|.|        |.:|.   ::.....|.:.|. |
Zfish   132 -----------SAGAESSNG----LYAGTGAPAS--------GPMPC---LSMTQHCSAQLYCLP 170

  Fly   643 ITNYRGQNDTWFDPLSYATSSSGQAQLGVGVGAGV-VSNVIRNGRAISAANAAAAAAADGTTGRV 706
            .|   ...|...||...|...:|:..|.:..|..: .|:.||:...::.......:..|.:.   
Zfish   171 PT---PPKDVSPDPACAAVRDAGKYHLHLVDGMKMECSSPIRSNPHLAQTTTPIPSYPDYSV--- 229

  Fly   707 DPGTFLSASASLSAMAAESGGDFYKPNSF---NVGGGGRSKANTSGAA-SSYSCPGSNATSAAT- 766
                              :|...|..:.|   |:.|...:|..:...| |...|....|||... 
Zfish   230 ------------------AGAHEYPASVFHSRNLLGNMTTKCKSKNRAFSGRECVNCGATSTPLW 276

  Fly   767 SAVASGTAATAATTLDEHVSRAN------SRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEPVCN 825
            ....:|.....|..|...::..|      .||||||:|||..|:||.|..|:|||||..||||||
Zfish   277 RRDGTGHYLCNACGLYHKMNGQNRPLIRPKRRLSASRRAGTCCANCQTGTTTLWRRNANGEPVCN 341

  Fly   826 ACGLYYKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSKSKNALNAIM----ESGSLVTNCHNV 886
            |||||||||:|.||||||||.||.|.||..| ||:|.:.:..:..::.:    .|.|.:.|.|: 
Zfish   342 ACGLYYKLHNVNRPLTMKKDGIQTRNRKMSG-KSKKRRGEHFHQFDSCVHDKPSSFSHMANIHH- 404

  Fly   887 GVVLDSSQMDVNDDMKPQLDLKPYNSYSS 915
                       ..:|.||:.|.|..|:||
Zfish   405 -----------PFNMTPQIQLHPAFSHSS 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 37/48 (77%)
ZnF_GATA 802..853 CDD:238123 37/50 (74%)
gata2bXP_009300818.1 ZnF_GATA 261..308 CDD:214648 9/46 (20%)
ZnF_GATA 264..314 CDD:238123 14/49 (29%)
ZnF_GATA 314..363 CDD:214648 37/48 (77%)
ZnF_GATA 319..369 CDD:238123 37/49 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573865
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.960

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