DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srp and GATAe

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster


Alignment Length:967 Identity:233/967 - (24%)
Similarity:328/967 - (33%) Gaps:372/967 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 QSEDQQQQQQQQAQIYEQQQQFLSQQLIS------------------------HHQQEQHQQAQQ 248
            |.:.||||||||.|:.:||.|.|::|.:.                        ..||||.||.||
  Fly    23 QQQQQQQQQQQQQQLQQQQHQALTKQQLQLLDKIKLESSNGADQLAQQTANNLDEQQEQQQQHQQ 87

  Fly   249 Q-------------------QHQQVVQEQHQASWLAYDLTSG------------SAAAAAAAAAA 282
            |                   :.|.||..::|...|.   |:|            |..|:.|::.:
  Fly    88 QAATSVGVVVQTGQAGVSEPEEQYVVVPRNQRRILT---TAGTLELNEAREGEPSTNASNASSGS 149

  Fly   283 ASHPHLFGQFSYPPSHHTPTQLYEHYPSTDPIMRNNFAFYSVYTGGGGGVGVGMTSHEHLAAAAA 347
            ||..|:..|.|   :|.:|..  .||....|  ||                ..:|.....||.|.
  Fly   150 ASDSHIEYQRS---AHQSPGA--THYVQMAP--RN----------------AEVTEQVGAAAGAP 191

  Fly   348 AAAAVAQGTTPNIDEVIQDTLKDECFEDGHSTDYHVLTSVSDMHTLKDSSPYALTHEQLHQQQHH 412
            .....|.....|.|:|.  .:|.|..|.|.:|.                                
  Fly   192 PGTIFAYPIICNGDDVA--AIKIETLEKGEATG-------------------------------- 222

  Fly   413 HQQQLHHHQQQQQQLYHQQQQQQQQQQHHHHHNNSTSSAGGDSPSSSHALSTLQSFTQLTSATQR 477
                  ..|||||||  ||.|.|||||                                      
  Fly   223 ------ESQQQQQQL--QQHQHQQQQQ-------------------------------------- 241

  Fly   478 DSLSPENDAYFAAAQLGSSLQNSSVYAGSLLTQTANGIQYGMQSPNQTQAHLQQQHHQQQQQQHQ 542
                                           ..|.||..||......::|...|.|||||    |
  Fly   242 -------------------------------CPTPNGASYGETIVISSEAEALQHHHQQQ----Q 271

  Fly   543 QHQQQQLQQQQQQHHHNQHQHHNSSSSSPGPAGLHHSSSSAATAAAVAAATA--AVNGHNSSL-- 603
            ||||   ||.|||||  |||                    ||.||:.||.|.  |.:.|..::  
  Fly   272 QHQQ---QQHQQQHH--QHQ--------------------AAAAASAAAQTVHIATSSHGGTVRF 311

  Fly   604 --ED---GYGSPRSSHSG-----GGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDTWFDPLS 658
              ||   ....|.:|.|.     ....|::.|.:...|.:.|:.  |||           |.|.|
  Fly   312 VTEDVRFTTAGPETSASNMYYDVPVVDGSVHANESKTYADLGNA--YAP-----------FPPSS 363

  Fly   659 YATSSSGQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAAADGTTGRVDPGTFLSASASLSAMAA 723
            ..:|:|..|.|..|   ..:.:|...|:.:  |.:.:.....|...:..|.||.:.|.       
  Fly   364 SFSSNSYAATLQQG---NTIYSVPGTGQFL--AKSESGLNQTGLLRQTGPATFQTISF------- 416

  Fly   724 ESGGDFYKP---------------NSFN------VGGGGRSKANTSGAASSYSCPGSNATSAATS 767
             .||:..:|               ::|:      .|.|..|.::...|:|.....||..|:::||
  Fly   417 -EGGNGIEPLWASPAPPEYQSVQFSNFHPQVIDEYGSGNMSTSHWPPASSIGQYDGSLVTASSTS 480

  Fly   768 A--------------VASGTA---------ATAATTLDEHVSRANSRRLSASKRAGLSCSNCHTT 809
            :              :..|:.         ...|..:.:..::..:.....::|.|::|:||.|.
  Fly   481 SPNHELKCENCHGPFLRKGSEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTN 545

  Fly   810 HTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSKSKNALNAIM 874
            .|:|||||..|.|||||||||||||::.|||:|||:.||||||||            ||...|.|
  Fly   546 STTLWRRNNEGNPVCNACGLYYKLHNMNRPLSMKKEGIQKRKRKP------------KNNGGAPM 598

  Fly   875 ESGSLVTNCHNVGVVLDSSQMDVNDDMKP-QLDLKPYNSYSSQPQQQLPQYQQQQQLLMADQHSS 938
            ....|.:....|.::       .|..:.| |:.:...||..:..|...|:        :.|..::
  Fly   599 HRAPLPSMSQGVNLM-------ANSPLYPSQVPVSMLNSQLNSQQNSSPE--------LHDMSTT 648

  Fly   939 AASSPHSMGSTSLSPSA---------MSHQHQTHPHQQQQQQLCSGLDMSPNSNYQMSPLNMQQH 994
            ..:....:.|.||:.:|         ||.:|..           :|...||.|            
  Fly   649 GQAGGQRVVSISLNATAPPTPDGTLNMSARHHV-----------TGESHSPYS------------ 690

  Fly   995 QQQQSCSMQHSPSTPTSI-----FNTPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSN 1046
              |||.....||..|.::     ...|.||.:...::|.....|:.........|||
  Fly   691 --QQSTPQSQSPHLPGTVPINRQIVQPVPTIESSRSSNTELTPSVITRTGLPERSSN 745

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 32/48 (67%)
ZnF_GATA 802..853 CDD:238123 35/50 (70%)
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 32/48 (67%)
ZnF_GATA 538..589 CDD:238123 35/50 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438455
Domainoid 1 1.000 63 1.000 Domainoid score I2907
eggNOG 1 0.900 - - E1_COG5641
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - mtm9213
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
76.840

Return to query results.
Submit another query.