Protein Alignment srp and Trps1

DIOPT Version :9

• Sequence 1: NP_732100.2
• Gene: srp / 41944
• FlyBaseID: FBgn0003507
• Length: 1264
• Species: Drosophila melanogaster
• Sequence 2: XP_038934688.1
• Gene: Trps1 / 299897
• RGDID: 1311883
• Length: 1319
• Species: Rattus norvegicus
• Alignment Length: 1334
• Identity: 256/1334 - (19%)
• Similarity: 428/1334 - (32%)
• Gaps: 445/1334 - (33%)

  Fly    80 ATGSNAAANETEIAIETENGEAATPTAAATAAAANLSSLESARSQALTSVVSETARQAVTTANAS 144
            |..|.||....|.....:..||..|...|...:.:  |||:.....::...:|.. ..|.:..|:
  Rat   139 AFSSPAAGGVCEPLKSPQRAEADDPQDMACTPSGD--SLETKEDHKMSPKATEET-GPVQSGQAN 200

  Fly   145 ATSTSTVTAATEIATATASD-----TAATSEAAIDDDPSAINTNNNNNNSKAQ--------NDAS 196
            ....|.|:.|:: .....||     :...|:..:.|:|.....:....:.|..        ||.:
  Rat   201 CQGLSPVSVASK-NPQVPSDGGVRLSKPKSDLLVSDNPDPAPLSPELQDFKCNICGYGYYGNDPT 264

  Fly   197 ESVKTKVISYHQSEDQQQQQQQQAQIYEQQQQFLSQQLISHHQQEQ--HQQAQQQQHQQV---VQ 256
            :.:| ....||.....:.:|..:          |..::::.|...|  |.:..|:.::.|   |.
  Rat   265 DLIK-HFRKYHLGLHNRTRQDAE----------LDSKILALHNMVQFSHSKDFQKVNRSVLSGVL 318

  Fly   257 EQHQASWLA-----YD--LTSGSAAAAAAAAAAASHPHL------FGQFSYPPSHHTPTQLYEHY 308
            :...:|..|     ||  :|||...............:.      |..|:|  ..::.|:|.:|:
  Rat   319 QDISSSRPALLNGTYDVQVTSGGTFIGIGRKTPDCQGNTKYFRCKFCNFTY--MGNSSTELEQHF 381

  Fly   309 PSTDPIMRNNFAFYSVYTGGGGGVGVGMTSHEHLAAAA----AAAAAVAQGTTPNIDEVIQDTLK 369
            ..|.|                ..:.|.:.|.|.:.|:.    .:..|:....:.::.: .||.:.
  Rat   382 LQTHP----------------NKIKVSLPSSEGVKASEKNSNKSIPALRASDSGDVGK-WQDKMT 429

  Fly   370 DECFED---GHSTDYHVL-------TSVSDMHTLKDSSPYALTHEQLHQQQHHHQQQLHHHQQQQ 424
            .:..:|   |:|.....|       |..:..:..|..|....:...|...:|:.:|    |...|
  Rat   430 VKAGDDTPVGYSVPIKPLDSSRQNGTEATSYYWCKFCSFSCESSSSLKLLEHYGKQ----HGAVQ 490

  Fly   425 QQLYHQQQQQQQQQQHHHHHNNSTSSAGG----------------DSP----------------- 456
            ....:.:...:..:....:.|:...|..|                |.|
  Rat   491 SGGLNPELNDKLPRGSVINQNDLAKSVEGEPLTKPEKGLSGAKKKDFPSKGAEDNMVTSYNCQFC 555

  Fly   457 ----SSSHALST------LQSFTQLTSATQ----------RDSLSPE---------------NDA 486
                |.||....      |:.:.||.:..:          |...|||               |.:
  Rat   556 DFRYSKSHGPDVIVVGPLLRHYQQLHNIHKCTIKHCPFCPRGLCSPEKHLGEITYPFACRKSNCS 620

  Fly   487 YFAAAQL-------GSSLQNSSVYAGSLLTQTANGIQYGMQSPNQTQA--------HLQQQHHQQ 536
            :.|...|       |||......:..|..|...:.:.:..::.:::||        ||.....||
  Rat   621 HCALLLLHLSPGVAGSSRVKHQCHQCSFSTPDVDVLLFHYETMHESQASDVKQEVNHLLGSEGQQ 685

  Fly   537 QQQQHQQHQ------QQQLQQQQQQHHHNQHQHHN----SSSSSPGPAGLHHSSSSAATAAAVAA 591
            ..:..::|.      ..|::::..:|:...|..:.    |.::....:.|.|.::.......||.
  Rat   686 AARDSKEHSCTKCDFITQVEEEISRHYRRAHSCYKCRQCSFTAGDTQSLLEHFNTVHCQEQEVAT 750

  Fly   592 ATAAVNGHNSSLEDGYGSPRSSHSGGGGGGTLPAFQRIAY----PNS-------GSVERYAPITN 645
            |    ||.    |||:..|.....        |......|    |:|       .|:.:...:.:
  Rat   751 A----NGE----EDGHAIPTIKEE--------PKIDLKVYSLLNPDSKMGETVPESIVKREKLDD 799

  Fly   646 YRGQND-TW----FDPLSYAT--------SSSGQAQLGVGVGAGVVSNVIRNGRAISAANAAAAA 697
            ..|..| .|    .|.|...|        .|....|..:|:...|.|:..:......:.|..||.
  Rat   800 KEGLKDKIWTESSTDDLRGVTWRGADILRGSPSYTQASLGLLTPVSSSQEQTKTLRDSPNVEAAH 864

  Fly   698 AADGTTG-RVDPGTFLSASASLSAMAAESGGDFYKPNS----FNVGGGGRSKANTSGAASSYSCP 757
            .|....| .||...||        ..|.:||:  |..|    :...|.|::|
  Rat   865 LARPMYGLAVDTKGFL--------QGAPAGGE--KSASLTQQYPASGEGKTK------------- 906

  Fly   758 GSNATSAATSAVASGTAATAATTLDEHVSRANSRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEP 822
             ..:.|...:...|||              .|.||...|   |:.|:||.||.|||||:|..|..
  Rat   907 -DESQSLLRAVTISGT--------------PNRRRRRGS---GVFCANCLTTKTSLWRKNANGGY 953

  Fly   823 VCNACGLYYKLHSVPRPLTMKKDT-----IQKRKRK---PKGTKSEKSKSKSKNALNAIMESGSL 879
            ||||||||.||||.||||.:.|..     |::|.||   |:..::|:...:.:.
  Rat   954 VCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPEALQAEQLNKQQRG----------- 1007

  Fly   880 VTNCHNVGVVLDSSQMDVNDDMKPQLDLKPYNSYSSQPQQQLPQYQQQQQLLMADQHSSAASSPH 944
                        |.:..||..   .|:.:..:..|...|:::|
  Rat  1008 ------------SGEEQVNGS---PLERRSEDHLSESHQREIP---------------------- 1035

  Fly   945 SMGSTSLSPSAMSHQHQ---THPHQQQQQQLCS-GLDMSPNSNYQMSPLNMQQHQQQQSCSMQHS 1005
                   .||...::.|   |..|..||..|.| .||:    :.:|.||::|....|:|
  Rat  1036 -------LPSLSKYEAQGSLTKSHSAQQPVLVSQTLDI----HKRMQPLHIQIKSPQES------ 1083

  Fly  1006 PSTPTSIFNTPSPTHQLHNNNNNNNNSSIFNNNNNNNSSSNENNNKLIQKYLQAQQLSSSSNSGS 1070
                     |..|          .|:||:     ::...|:|..:. |:||::..:..:.|..||
  Rat  1084 ---------TGDP----------GNSSSV-----SDGKGSSERGSP-IEKYMRPAKHPNYSPPGS 1123

  Fly  1071 TSD---HQLL-AQLLPNSITAAAAAAAAAAAAAIKTEALSLTSQANCSTASAGLMVTSTPTTASS 1131
            ..:   :.|. ...:.|...:.|             :.|...|:..       |.|...|
  Rat  1124 PIEKYQYPLFGVPFVHNDFQSEA-------------DWLRFWSKYK-------LSVPGNP----- 1163

  Fly  1132 TLSSLSHSNIISLQNPYHQAGMTLCKPTRPSPPYYLTP--------------------------- 1169
              ..|||  :..|.||        |:...|.|.:.|.|
  Rat  1164 --HYLSH--VPGLPNP--------CQNYVPYPTFNLPPHFSAVGSDNDIPLDLAIKHSRPGPTAN 1216

  Fly  1170 ----EEDEQPA---------LIKMEEMDQSQQQQ 1190
                |:.:.|:         ::|.|::|:|.|.:
  Rat  1217 GAAKEKSKAPSNVKNEGPLNVVKTEKVDRSTQDE 1250

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
srp	NP_732100.2	ZnF_GATA	798..847	CDD:214648	30/53 (57%)
		ZnF_GATA	802..853	CDD:238123	31/55 (56%)
Trps1	XP_038934688.1	ZnF_GATA	933..989	CDD:238123	31/55 (56%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166334668
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5641
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.830