DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and GATA6

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_005248.2 Gene:GATA6 / 2627 HGNCID:4174 Length:595 Species:Homo sapiens


Alignment Length:528 Identity:142/528 - (26%)
Similarity:196/528 - (37%) Gaps:156/528 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   445 NNSTSSAGGD-SPSSSHALSTLQSFTQLTSATQRDSL-----------SPENDAYFAAAQLGSSL 497
            ::|:.|.||: .|..:....|.|..|:..:.....||           :|...:....|..|.:|
Human    42 SSSSCSRGGERGPGGASNCGTPQLDTEAAAGPPARSLLLSSYASHPFGAPHGPSAPGVAGPGGNL 106

  Fly   498 QN----------SSVYAGSLLTQTANGIQYGMQSPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQ 552
            .:          ......|.|..::.|.:....:|.|.:...|..                    
Human   107 SSWEDLLLFTDLDQAATASKLLWSSRGAKLSPFAPEQPEEMYQTL-------------------- 151

  Fly   553 QQQHHHNQHQHHNSSSSSPGPA-------GLHHSSSSAATAAAVAAA-----TAAVNGHNSSLE- 604
                         ::.||.|||       |..||:::||.|||.|::     |..|......|. 
Human   152 -------------AALSSQGPAAYDGAPGGFVHSAAAAAAAAAAASSPVYVPTTRVGSMLPGLPY 203

  Fly   605 --DGYGSPRSSHSGG-------------------------------GGGGTLPAFQRIAYPNSGS 636
              .|.||..::|:||                               ||.|:..|.....:|.|.|
Human   204 HLQGSGSGPANHAGGAGAHPGWPQASADSPPYGSGGGAAGGGAAGPGGAGSAAAHVSARFPYSPS 268

  Fly   637 VERYAPITNYRGQNDTWFDPLSYATSSSGQAQLGVGVGAGVVSNVIRNGRAISAANAAAAAAADG 701
                .|:.|...:     :|..||.:.||.|.   ||..|..|.....||....::.:||...:|
Human   269 ----PPMANGAAR-----EPGGYAAAGSGGAG---GVSGGGSSLAAMGGREPQYSSLSAARPLNG 321

  Fly   702 T------TGRVDPGTFLSASASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCP-GS 759
            |      .....|..: |.........|...|.|..|...::         .|.|.:....| |.
Human   322 TYHHHHHHHHHHPSPY-SPYVGAPLTPAWPAGPFETPVLHSL---------QSRAGAPLPVPRGP 376

  Fly   760 NA-----TSAATSAVASGTAATAATTLD--EH--------VSRAN---------SRRLSASKRAG 800
            :|     .|.:...|..|:..|.....|  .|        .|:.|         .:|:.:|:|.|
Human   377 SADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRPLIKPQKRVPSSRRLG 441

  Fly   801 LSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSK 865
            |||:|||||.|:|||||..|||||||||||.|||.|||||.|||:.||.||||||..  .|||:.
Human   442 LSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKEGIQTRKRKPKNI--NKSKTC 504

  Fly   866 SKNALNAI 873
            |.|:.|:|
Human   505 SGNSNNSI 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 38/48 (79%)
ZnF_GATA 802..853 CDD:238123 39/50 (78%)
GATA6NP_005248.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 14..71 8/28 (29%)
GATA-N 147..377 CDD:283099 59/284 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..255 8/46 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..339 14/56 (25%)
ZnF_GATA 388..435 CDD:214648 8/46 (17%)
ZnF_GATA 389..434 CDD:238123 7/44 (16%)
ZnF_GATA 441..488 CDD:214648 37/46 (80%)
ZnF_GATA 443..494 CDD:238123 39/50 (78%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 482..561 18/33 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165140997
Domainoid 1 1.000 69 1.000 Domainoid score I9610
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
65.770

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