DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and GATA2

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_001139133.1 Gene:GATA2 / 2624 HGNCID:4171 Length:480 Species:Homo sapiens


Alignment Length:546 Identity:140/546 - (25%)
Similarity:181/546 - (33%) Gaps:189/546 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   519 MQSPNQTQAHLQQQHHQQQQQQHQQHQQ-----------QQLQQQQQQHHHNQHQHHNSSSSSPG 572
            |..|....|.....||......:.:..|           ..|..|...::.|........|.||.
Human    11 MAHPAVLNAQHPDSHHPGLAHNYMEPAQLLPPDEVDVFFNHLDSQGNPYYANPAHARARVSYSPA 75

  Fly   573 -----------PAGLHHSSSSAATAAAVAAATAAVNGHN-------------SSLEDGYGSPRSS 613
                       |..||............|.:.||.:.||             .|...|.|.|.|.
Human    76 HARLTGGQMCRPHLLHSPGLPWLDGGKAALSAAAAHHHNPWTVSPFSKTPLHPSAAGGPGGPLSV 140

  Fly   614 HSGGGGGGTLPAFQRIAYPNSGSVERYAPITNYRGQNDTWFDP---------------LSYATSS 663
            :.|.|||.        ...:..||....|...:.|.:...|.|               .|.|:||
Human   141 YPGAGGGS--------GGGSGSSVASLTPTAAHSGSHLFGFPPTPPKEVSPDPSTTGAASPASSS 197

  Fly   664 S------GQAQLGVGVGAGVVSNV-------IRNGRAISAANAAA------------AAAADGTT 703
            :      |:.:.||.....:..::       :|.|.|......|.            |||.|.::
Human   198 AGGSAARGEDKDGVKYQVSLTESMKMESGSPLRPGLATMGTQPATHHPIPTYPSYVPAAAHDYSS 262

  Fly   704 GRVDPGTFLSASASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPGSNATSAATSA 768
            |...||.||...||           .:.|..       ||||.        ||      |.....
Human   263 GLFHPGGFLGGPAS-----------SFTPKQ-------RSKAR--------SC------SEGREC 295

  Fly   769 VASGTAATA-------------ATTLDEHVSRAN------SRRLSASKRAGLSCSNCHTTHTSLW 814
            |..|..||.             |..|...::..|      .|||||::|||..|:||.||.|:||
Human   296 VNCGATATPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTCCANCQTTTTTLW 360

  Fly   815 RRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKPKGTKSEKSKSKSKNA-----LNAIM 874
            |||..|:|||||||||||||:|.|||||||:.||.|.||    .|.|||...|.|     |:..|
Human   361 RRNANGDPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRK----MSNKSKKSKKGAECFEELSKCM 421

  Fly   875 ESGSLVTNCHNVGVVLDSSQMDVNDDMKPQLDLKPYNSYS----SQPQQQLPQYQQQQQLLMADQ 935
            :..|                             .|:::.:    ..|...||.:.....:|....
Human   422 QEKS-----------------------------SPFSAAALAGHMAPVGHLPPFSHSGHILPTPT 457

  Fly   936 --HSSAASS---PHSMGSTSLSPSAM 956
              |.|::.|   ||        ||:|
Human   458 PIHPSSSLSFGHPH--------PSSM 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 36/48 (75%)
ZnF_GATA 802..853 CDD:238123 36/50 (72%)
GATA2NP_001139133.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..209 20/97 (21%)
ZnF_GATA 294..344 CDD:238123 12/49 (24%)
ZnF_GATA 349..398 CDD:238123 36/48 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 448..480 9/36 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165140992
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
65.870

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