DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment srp and gaf1

DIOPT Version :9

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_588278.2 Gene:gaf1 / 2539024 PomBaseID:SPCC1902.01 Length:855 Species:Schizosaccharomyces pombe


Alignment Length:922 Identity:184/922 - (19%)
Similarity:302/922 - (32%) Gaps:270/922 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 AAANLSSLESARSQALTSVVSETARQAVTTANASATSTSTVTAATEIATATASDTAATSEAAIDD 175
            |.:.||:  ..|.:.||..:.....|...|.|..:.:.:..|.:...|.::|.....||.|....
pombe    48 AKSELSN--GRRVENLTWRLMSINLQKNLTPNGDSNTLTPDTFSDPTAPSSAQSVPPTSSAETTA 110

  Fly   176 DPSAINTNNNNNNSKAQNDASESVKTKVISYHQSEDQQQQQQQQAQIYEQQQQFLSQQLISHH-- 238
            |.|  :|....|...|.:..:::..:.::.::..    |::.::....|...:...:.:...|  
pombe   111 DNS--DTEMKLNPIPAYSVPADTTGSSLMEFNYI----QRRVRKTSFDESTAKSKKRSIADSHFP 169

  Fly   239 ----QQEQHQQAQQQQHQQVVQEQHQASWLAYDLTSGSAAAAAAAAAAASHPHLFGQFSYPPSHH 299
                .|..|....|......:...:..:::..|:.|.:.:...|:|...|.|..|  ||. .||:
pombe   170 DPNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDSSNFSNLDASALPISPPSDF--FSV-HSHN 231

  Fly   300 TPTQLYEHYPSTDPIMRNNFAF----------------------------YSVYTGGGGGVGVGM 336
            .|     :.|.:.|...||.|.                            .|....||....|..
pombe   232 LP-----NAPPSIPANSNNSASPNQRIKASPKHADTDVLGLDFDMTPSEPSSFPENGGFPSFVDA 291

  Fly   337 TSHEHLAAAAAAAAAVAQGTTPNIDEVIQDTLKDECFEDGH----------STDYHVLTSVSDMH 391
            .:||.....::|..:.:                   ||.|.          ||.||..|:..|..
pombe   292 NTHEQTLFPSSATNSFS-------------------FEHGSAGFPIPGSVPSTSYHANTASEDGF 337

  Fly   392 TLKDSSPYALTHEQLHQQQHHHQQQLHHHQQQQQQLYHQQQQQQQQQQHHHHHNNSTSSAGGDSP 456
                ||.|                                              ||....|..||
pombe   338 ----SSSY----------------------------------------------NSQGLFGISSP 352

  Fly   457 SSSHALSTLQSFTQLTSATQRDSLSPENDAYFAAAQLGSSL-QNSSVYAGSLLTQTANGIQYGMQ 520
            .|| .::..|||....|......:|..|.      ::.|.| |:...|.........:.:.....
pombe   353 LSS-GVTPNQSFFPDVSGNNIFDVSRNNH------EVSSPLIQSPGSYVSMPSINMVSSLPISAP 410

  Fly   521 SPNQTQAHLQQQHHQQQQQQHQQHQQQQLQQQQQQHHHNQHQHHNSSSSSPGPAGLHHSSSSAAT 585
            .||                          ...|.....|..:.::|.|...|.:|:..:..:|  
pombe   411 VPN--------------------------SNSQFPRRPNTFRTNSSKSVGQGSSGVDSNQENA-- 447

  Fly   586 AAAVAAATAAVNGHNSS-LEDGYGSPRSSHSGGGGGGTL-PAFQRIAYPNSGSVERYAPI----T 644
                .:...:::.|||: ...|..:..||:|...|.... |.|.|:     |:....||:    :
pombe   448 ----ESFNPSISSHNSAEWASGETTGHSSNSPLPGSDMFSPQFMRV-----GTAMGVAPVRSNSS 503

  Fly   645 NYRGQN-----DTWFDPLSYATSSSGQAQLGVGVGAGVVSNVIRNGRAISAAN-AAAAAAADGTT 703
            |..|||     ...|..:.:...|:....| :|...|:.:::....||.||.: .:.....:|..
pombe   504 NNFGQNFFHQTSPQFSAVPHRKVSAQDTNL-MGSSPGMYNHMPYLNRATSANSITSPGVLPEGMA 567

  Fly   704 GRVDPGTFLSASASLSAMAAESGGDFYKPNSFNVGGGGRSKANTSGAASSYSCPGSNATSAATSA 768
            ..:...|..:|:...:|:.........:..|||:                    ..||.....|.
pombe   568 ASLKKRTTNTAATPQAALPTTLDTKKDRSVSFNI--------------------NKNAEKPTVSN 612

  Fly   769 VASGTAATAATTLDEHVSRANSRRLSASKRAGLSCSNCHTTHTSLWRRNPAGEPVCNACGLYYKL 833
            .|           ::....||:||.:|:.... :|:||.|..|.||||:|.|:|:||||||:.|:
pombe   613 AA-----------EDKKGDANTRRANATNPTP-TCTNCQTRTTPLWRRSPDGQPLCNACGLFMKI 665

  Fly   834 HSVPRPLTMKKDTIQKRKR------KPK---GTKSEKSKSKSKNALNAIMESGSLVTNCHNVGVV 889
            :.|.|||::|.|.|:||.|      .||   |.|....||.||:                     
pombe   666 NGVVRPLSLKTDVIKKRNRGVGTSATPKQSGGRKGSTRKSSSKS--------------------- 709

  Fly   890 LDSSQMDVNDDMKPQLDLKPYN-------------------SYSSQPQQQLPQYQQQQQLLMADQ 935
              ||......||||:.|.|..:                   |..|..|||..:.:.:.|.:::..
pombe   710 --SSAKSTAADMKPKADSKSISPGFVGGNQSLSSERIPLDPSMRSPLQQQSSENESKSQSMLSAN 772

  Fly   936 HSSAASSPHSMG 947
            :.:|..:...:|
pombe   773 NLNAGVNDFGLG 784

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 798..847 CDD:214648 25/48 (52%)
ZnF_GATA 802..853 CDD:238123 29/56 (52%)
gaf1NP_588278.2 DUF1752 41..67 CDD:285721 6/20 (30%)
GAT1 183..841 CDD:227928 159/779 (20%)
ZnF_GATA 634..684 CDD:238123 28/49 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_107467
Panther 1 1.100 - - O PTHR10071
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1745
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.890

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