Protein Alignment srp and end-3

DIOPT Version :10

• Sequence 1: NP_732100.2
• Gene: srp / 41944
• FlyBaseID: FBgn0003507
• Length: 1264
• Species: Drosophila melanogaster
• Sequence 2: NP_506480.1
• Gene: end-3 / 191631
• WormBaseID: WBGene00001311
• Length: 242
• Species: Caenorhabditis elegans
• Alignment Length: 182
• Identity: 45/182 - (24%)
• Similarity: 68/182 - (37%)
• Gaps: 31/182 - (17%)

  Fly   698 AADGTTGRVDPGTFLSASASLSAMAAESGGDFYKPN--------------------SFNVGGGGR 742
            |.|.||...:.|  ...|...:.|..::|..:|..|                    .|.......
 Worm    55 AQDMTTNSYNGG--YDNSMQQNFMQPDNGAGYYNENYQQMPDFQFPVQNFDFTNQFEFTTPINDL 117

  Fly   743 SKANTSGAASSYSCPGSNATSAATSAVASGTAATAATTLDE-----HVSRANSRRLSASKRAGLS 802
            .::.||   .:::.|.:|..|.....:..|.....|..:.|     ..|:...:::| :.....|
 Worm   118 QQSQTS---INHTNPDNNENSMPEIPIDGGFNFFPAQEVQEWKPARKASKNKIKKIS-TMHINSS 178

  Fly   803 CSNCHTTHTSLWRRNPAGEPVCNACGLYYKLHSVPRPLTMKKDTIQKRKRKP 854
            ||||....|.|||||..||..||.|.||.::....||..:......||:|:|
 Worm   179 CSNCGCRETKLWRRNEQGETECNPCNLYERVKGHKRPQHLWNKPAAKRRRRP 230

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
srp	NP_732100.2	ZnF_GATA	802..853	CDD:238123	22/50 (44%)
end-3	NP_506480.1	ZnF_GATA	178..229	CDD:238123	22/50 (44%)