DRSC/TRiP Functional Genomics Resources

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Protein Alignment srp and elt-6

DIOPT Version :10

Sequence 1:NP_732100.2 Gene:srp / 41944 FlyBaseID:FBgn0003507 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_500144.2 Gene:elt-6 / 176993 WormBaseID:WBGene00001253 Length:367 Species:Caenorhabditis elegans


Alignment Length:91 Identity:18/91 - (19%)
Similarity:35/91 - (38%) Gaps:16/91 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 GAIFVNRDGRLFAFVLQFMRDGKNTVLPKDKDV---LAQLKREADFF-------GMEVFKYLIQE 140
            |.:....||      :..:....|.:|..|.|.   :..|:...:.|       |..:|..|.:.
 Worm   429 GPMMYGSDG------IGGLASSANQLLQDDMDQFGDVGALEDNVESFLSQDDGDGGSLFGTLKRN 487

  Fly   141 TLVDIEKEQRANTNDIVDIRNSVNQI 166
            :.|..|..:..:.|::..||.|.:::
 Worm   488 SSVHTETSKPFSFNEVSCIRKSASKV 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
srpNP_732100.2 ZnF_GATA 802..853 CDD:238123
elt-6NP_500144.2 GAT1 <254..>367 CDD:227928
ZnF_GATA 264..315 CDD:238123
Blue background indicates that the domain is not in the aligned region.

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