DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and CHD1

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_011091.1 Gene:CHD1 / 856911 SGDID:S000000966 Length:1468 Species:Saccharomyces cerevisiae


Alignment Length:878 Identity:237/878 - (26%)
Similarity:374/878 - (42%) Gaps:238/878 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  1155 LGSLLPDLGVCNELVSSMQLIE-TAAPHLHVALHPQMFALLPSLGFIVCHPLKAVRHMAARCIAV 1218
            |...:|||..|.|  :...||: |...|||     ..:....|:|     .::.::.:...|   
Yeast   197 LEKTVPDLNNCKE--NYEFLIKWTDESHLH-----NTWETYESIG-----QVRGLKRLDNYC--- 246

  Fly  1219 LAEIDACQTMQFVVHDLLPLLGKIEQLIERQGAIEAIERVVSRLQIKVVPYIVLLVVPLLGAMSD 1283
                     .||::.|                           .|:::.||:....:.::    |
Yeast   247 ---------KQFIIED---------------------------QQVRLDPYVTAEDIEIM----D 271

  Fly  1284 PDESVRL---LSTHCFANLV--QLMPLDGKTEQL-----------------------KSDPLQAR 1320
            .:...||   ...|....::  |...|:..|.||                       |..|.|.:
Yeast   272 MERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVK 336

  Fly  1321 KTRDREFLDYLFNPKSIP----NYKVPVP----ISV--------ELRCYQQAGINWLWFLNKYNL 1369
            ..::||      |.|.:|    ||....|    :||        |||.:|..||||:.||.....
Yeast   337 HFQNRE------NSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGD 395

  Fly  1370 HGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFL-------- 1426
            :|||.|:||||||:||:..::.....|:    .|.|.:::.|.:....|:...||:.        
Yeast   396 NGILADEMGLGKTVQTVAFISWLIFARR----QNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICY 456

  Fly  1427 --DQGS--VLRPLHYYGFPVGREKLRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHI 1487
              :|.|  .:|...:|..|..:.|..    .|.|:::.:|:.:.||......|.:.:..:||.|.
Yeast   457 MGNQKSRDTIREYEFYTNPRAKGKKT----MKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHR 517

  Fly  1488 IKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSR 1552
            :||.::...:::...|..:|::::|||:|||:.||.:|.:|||||          ||:  |....
Yeast   518 LKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPG----------RFT--IDQEI 570

  Fly  1553 DAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNK 1617
            |.::..:|||..:   ..|||::.||:|||:|:||.|.||.|..:.|..|||.:|...|:     
Yeast   571 DFENQDEEQEEYI---HDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYK----- 627

  Fly  1618 HLKDCLDKLGDSSSASMVTENLSAKT--------HIFQALRYLQNVCNHPKLVLRQSEELT---- 1670
                           :::|:|.||.|        .:...:..|:...|||.|.....|.:.    
Yeast   628 ---------------NILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 677

  Fly  1671 --KVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDL 1733
              |:|.:..|...    |..|.|:..|.|||...       ....||.|||.|:..||||:...|
Yeast   678 DGKMTRENVLRGL----IMSSGKMVLLDQLLTRL-------KKDGHRVLIFSQMVRMLDILGDYL 731

  Fly  1734 LRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSID-VLLLTTMVGGLGLNLTGADTVIFVEHDW 1797
               .:..:.:.||||:||::||:..:::|||..|.| |.||:|..||||:||..||||:..:.||
Yeast   732 ---SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW 793

  Fly  1798 NPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVS------------- 1849
            ||..|||||.||||||||..|.||||::::::||:::...:.|::....::|             
Yeast   794 NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKN 858

  Fly  1850 ----AENASLQTMGTSQIF---------------DLFNGGKD--KGAESGSSAVQGTA------- 1886
                .|.:::...|...:|               |:.|..:|  ...:.|.|.:.|..       
Yeast   859 EPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEV 923

  Fly  1887 ---SGGMSMNTII--ENLPELWSEHQ--YEEEY 1912
               ...:..:.||  |.|.:|..|.|  .:|||
Yeast   924 TDYKADIDWDDIIPEEELKKLQDEEQKRKDEEY 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 177/545 (32%)
CHD1NP_011091.1 CD1_tandem_CHD1_yeast_like 175..247 CDD:349312 15/73 (21%)
CD2_tandem_ScCHD1_like 283..341 CDD:349311 9/57 (16%)
PLN03142 363..>961 CDD:215601 196/651 (30%)
Cdh1_DBD_1 1010..1129 CDD:408024
SANT_TRF 1175..>1204 CDD:212558
DUF4208 1368..1460 CDD:464035
Blue background indicates that the domain is not in the aligned region.

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