DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and RDH54

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_009629.6 Gene:RDH54 / 852365 SGDID:S000000277 Length:958 Species:Saccharomyces cerevisiae


Alignment Length:695 Identity:193/695 - (27%)
Similarity:306/695 - (44%) Gaps:140/695 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1310 EQLKSDPLQARKTRDREF-----LDYLFNPKSI-PNYKVPVPISVE------LRCYQQAGINWLW 1362
            |.:.:.|..::.::.:::     ::.:.||..: .|....|.:.|:      ||.:|:.|:.:::
Yeast   244 EHMTTVPKTSQNSKAKKYYPVFDVNKIDNPIVMNKNAAAEVDVIVDPLLGKFLRPHQREGVKFMY 308

  Fly  1363 ------------------------FLNKYNLHG-ILCDDMGLGKTLQTICILAGDHMHRQT---- 1398
                                    ..|..::.| :|.|||||||||.:|.::.  .:.|||    
Yeast   309 DCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSITLIW--TLIRQTPFAS 371

  Fly  1399 ---ANLANLP-------SLVICPPTLTGHWVYEVEKFL------------------DQGSVLRPL 1435
               .:.:.:|       .||:||.||.|:|..|..|:|                  |:.:|...|
Yeast   372 KVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKWLNLSRIGVLTLSSRNSPDMDKMAVRNFL 436

  Fly  1436 H----YYGFPVGREKLRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSS 1496
            .    |....:|.|||.|        |....:..:..||..        |.||||.:|||.:|..
Yeast   437 KVQRTYQVLIIGYEKLLS--------VSEELEKNKHLIDML--------VCDEGHRLKNGASKIL 485

  Fly  1497 KAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQ 1561
            ..:|.|....:|:|:||||||::.|.:::.||:.||.||:...|.:||..||..:||..:...|:
Yeast   486 NTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPITRARDTANRYNEE 550

  Fly  1562 --EAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLD 1624
              |.|....:.:......|:|||....:.|.||||....|.|:....|:..::|.......| ..
Yeast   551 LLEKGEERSKEMIEITKRFILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLD-FG 614

  Fly  1625 KLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDIEHS 1689
            :|..|||..::|              .|:.|||.|.||  .|:...|...:...|..|.....:|
Yeast   615 QLTFSSSLGLIT--------------LLKKVCNSPGLV--GSDPYYKSHIKDTQSQDSYSRSLNS 663

  Fly  1690 AKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQ 1754
            .||..|..||.....|      ::.:.::.......|||:|..:   ::..:::.|||||:||.|
Yeast   664 GKLKVLMTLLEGIRKG------TKEKVVVVSNYTQTLDIIENLM---NMAGMSHCRLDGSIPAKQ 719

  Fly  1755 RQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVN 1819
            |..||.:||.:|:|...||:...||:||||.||..:|..::||||..|||||.|.||.||||...
Yeast   720 RDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCF 784

  Fly  1820 VYRLITRNSLEEKIMGLQKF------KILTANTVVSAENASLQTMGTSQIFDLFNGGKDKGAESG 1878
            :|||:|...::|||:..|..      |.|..:.:.:.|:::........:.|||:...|..:.: 
Yeast   785 IYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKDLFSVHTDTKSNT- 848

  Fly  1879 SSAVQGTASGGMSMNTIIENLPELWSEHQYEEEYDLGNFVQALKK 1923
                          :.:|.:...|..|.:|.|.....|.|:..|:
Yeast   849 --------------HDLICSCDGLGEEIEYPETNQQQNTVELRKR 879

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 175/581 (30%)
RDH54NP_009629.6 DUF2439 108..>158 CDD:463065
DEXHc_RAD54 296..573 CDD:350762 82/294 (28%)
SF2_C_SNF 663..789 CDD:350180 55/134 (41%)
Blue background indicates that the domain is not in the aligned region.

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