DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hel89B and CHR17

DIOPT Version :9

Sequence 1:NP_001287351.1 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_850847.1 Gene:CHR17 / 831980 AraportID:AT5G18620 Length:1072 Species:Arabidopsis thaliana


Alignment Length:671 Identity:203/671 - (30%)
Similarity:305/671 - (45%) Gaps:119/671 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly  1241 KIEQLIERQGA-IEAIERVVSRLQIKVVPYIVLLVVPLLGAMSDPDESVRLLSTHCFANLVQLMP 1304
            ||:|:::.|.| |:|......:.:||.:                      |..|..||:..    
plant    99 KIQQILDSQNASIDADMNNKGKGRIKYL----------------------LQQTELFAHFA---- 137

  Fly  1305 LDGKTEQLKSDPLQARK---------------TRDREFLDY----LFNPKSIPNYKVPVPISVEL 1350
                    ||||..::|               ..|.|.|..    :...........|..|..:|
plant   138 --------KSDPSPSQKKGKGRGRHSSKLTEEEEDEECLKEEEGGIVGSGGTRLLTQPACIQGKL 194

  Fly  1351 RCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLT 1415
            |.||.||:|||..|.:..::|||.|:||||||||||.:||..|.:|.    .|.|.:|:.|.:..
plant   195 RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRG----INGPHMVVAPKSTL 255

  Fly  1416 GHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSD--IGTKCNLVVASYDTVRKDIDFFSGIHFN 1478
            |:|:.|:.:|.   .|||.:.:.|.|..|..:|.:  :..|.::.|.|::...|:........:.
plant   256 GNWMNEIRRFC---PVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWR 317

  Fly  1479 YCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQR 1543
            |.::||.|.|||..:..||.::....|:||:::|||:|||:.|||:|.:||:|....:.:.|.:.
plant   318 YIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEW 382

  Fly  1544 FSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQL 1608
            |.  |....|      :||    .::.||:.:.||||||:|.||.|.||||....|...:|.:|.
plant   383 FQ--ISGEND------QQE----VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQK 435

  Fly  1609 RLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSEELTKVT 1673
            :.|:....|.|:              |......:..:......|:..||||.|...........|
plant   436 QYYKALLQKDLE--------------VVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTT 486

  Fly  1674 SQLALSNSS----LDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLL 1734
            ....::|:.    ||.:     ||.||.              ...|.|||.|:..:|||:|..|:
plant   487 GDHLVTNAGKMVLLDKL-----LPKLKD--------------RDSRVLIFSQMTRLLDILEDYLM 532

  Fly  1735 RRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSID-VLLLTTMVGGLGLNLTGADTVIFVEHDWN 1798
            .|   ...|.|:||:....:|...:..:|...|.. |.||:|..||||:||..||.||..:.|||
plant   533 YR---GYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWN 594

  Fly  1799 PMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAEN--ASLQTMGTS 1861
            |..||||.||||||||||.|.|:|..|.|::|.|::. :.:|.|..:.:|..:.  |..:|:...
plant   595 PQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIE-RAYKKLALDALVIQQGRLAEQKTVNKD 658

  Fly  1862 QIFDLFNGGKDKGAESGSSAV 1882
            ::..:...|.:....|..|.:
plant   659 ELLQMVRYGAEMVFSSKDSTI 679

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_001287351.1 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:288874
HEAT repeat 1234..1261 CDD:293787 7/20 (35%)
HEAT repeat 1269..1298 CDD:293787 3/28 (11%)
SNF2_N 1353..1662 CDD:278600 104/310 (34%)
DEXDc 1370..1514 CDD:238005 50/145 (34%)
Helicase_C 1689..1813 CDD:278689 49/124 (40%)
CHR17NP_850847.1 PLN03142 19..1056 CDD:215601 203/671 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D61251at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.