DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and SYD

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_001325348.1 Gene:SYD / 817375 AraportID:AT2G28290 Length:3575 Species:Arabidopsis thaliana


Alignment Length:519 Identity:180/519 - (34%)
Similarity:273/519 - (52%) Gaps:64/519 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  1349 ELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQT---ICILAGDHMHRQTANLANLPSLVIC 1410
            :||.||..|:.||..|...:|:|||.|:||||||:|.   ||.|      .:|.|... |.||:.
plant   754 KLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYL------METKNDRG-PFLVVV 811

  Fly  1411 PPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSD--IGTKCNLVVASYDTV--RKDIDF 1471
            |.::...|..|:..:...   :..:.|.|.|..|.||..:  :..|.|:::.:|:.:  :.|...
plant   812 PSSVLPGWQSEINFWAPS---IHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPK 873

  Fly  1472 FSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGT 1536
            .|.||::|.::||||.|||...|.:..:|...::|||:|:|||:|||:.|||:|.:||:|....:
plant   874 LSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNS 938

  Fly  1537 EKQFVQRFSRPILSSRDAKSSAKE----QEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQ 1597
            .:.|.|.|::|..|  :.:|||:|    :|..:|.:..||:.:.||:|||:|..|..:||.||.:
plant   939 SEDFSQWFNKPFQS--NGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIER 1001

  Fly  1598 DLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLV 1662
            .:.||.|     .|:....|.::|.|..:|::.|.:           :..::..|:|:||||.|.
plant  1002 LIRCEAS-----AYQKLLMKRVEDNLGSIGNAKSRA-----------VHNSVMELRNICNHPYLS 1050

  Fly  1663 LRQSEELTKVTSQLALSN-----SSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQL 1722
            ...|||:..:..:..|..     ..|:.::.  .||.||              .:.||.|.|..:
plant  1051 QLHSEEVNNIIPKHFLPPIVRLCGKLEMLDR--MLPKLK--------------ATDHRVLFFSTM 1099

  Fly  1723 KAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPS-IDVLLLTTMVGGLGLNLTG 1786
            ..:||::|..|.   |....||||||......|..:::.||...| ..:.||:...||:|:||..
plant  1100 TRLLDVMEDYLT---LKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA 1161

  Fly  1787 ADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSA 1850
            |||||..:.||||..||||..|||||||||.|.|.|..|.||:||::....:.|:..||..::|
plant  1162 ADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITA 1225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 179/516 (35%)
SYDNP_001325348.1 QLQ 277..310 CDD:214931
PLN03142 604..>1216 CDD:215601 176/508 (35%)
SnAC 1282..1369 CDD:464219
PHA03307 1491..>1819 CDD:223039
rne <3168..3342 CDD:236766
Blue background indicates that the domain is not in the aligned region.

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