DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and chd2

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:XP_021323365.1 Gene:chd2 / 569795 ZFINID:ZDB-GENE-050419-256 Length:1817 Species:Danio rerio


Alignment Length:649 Identity:195/649 - (30%)
Similarity:300/649 - (46%) Gaps:133/649 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1334 PKSIPNYKVPVPI---SVELRCYQQAGINWLWFLNKYNLHG-------ILCDDMGLGKTLQTICI 1388
            |:.:|..|.|..|   ::|||.||..|:|||       .|.       ||.|:||||||:|||..
Zfish   474 PRFVPLKKQPSYIGDENLELRDYQLDGVNWL-------AHSWCRCNSVILADEMGLGKTIQTISF 531

  Fly  1389 LAG-DHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLR---- 1448
            |:. .|.|:...     |.:|:.|.:....|..|.:.:....:|   :.|.|....|:.:|    
Zfish   532 LSYLFHQHQLYG-----PFIVVVPLSTLTSWQREFDTWAPDMNV---VVYLGDVTSRKTIRDYEW 588

  Fly  1449 ---SDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLIL 1510
               .....|.|.::.:|:.:.||......|::.:..:||.|.:||..:...|.:...::||||::
Zfish   589 INPQTKRIKFNALLTTYEILLKDKGVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLI 653

  Fly  1511 SGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQV 1575
            :|||:||::.|||||..|||.....:.:.|           .|.....::.     ..::||:.:
Zfish   654 TGTPLQNSLKELWSLLHFLMSDKFESWEDF-----------EDEHGKGRDN-----GYQSLHKVL 702

  Fly  1576 LPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLS 1640
            .||||||||:||.|.||.|:.|.|..::|..|.:.|:....::.| .|.|....||:..:     
Zfish   703 EPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWILTRNFK-ALSKGTRGSSSGFL----- 761

  Fly  1641 AKTHIFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLL---DC 1702
                  ..:..|:..|||..|: :|.|:......|..|.:.    :....||..|.:||.   |.
Zfish   762 ------NIVMELKKCCNHAFLI-KQPEDGENDAPQEHLQSL----VRGGGKLVLLDKLLTRLKDR 815

  Fly  1703 GIGVQTESVSQHRALIFCQLKAMLDIVEQDL-LRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDP 1766
            |          :|.|||.|:..||||:...| ::|:    .:.|||||:....|:..:::||::.
Zfish   816 G----------NRVLIFSQMVRMLDILADYLSMKRY----QFQRLDGSIKGELRKQALDHFNAEG 866

  Fly  1767 SID-VLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLE 1830
            |.| ..||:|..||||:||..||||:..:.||||..||||..|||||||||.||:|||:|:.::|
Zfish   867 SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 931

  Fly  1831 EKIMGLQKFKIL-----------TANTVVSAENA-------------SLQTMGTSQIF------- 1864
            |.|:...|.|::           |..||:...:|             ::...|...:|       
Zfish   932 EDIIERAKKKMVLDHLVIQRMDTTGRTVLDNSSANSNSNPFNKEELSAILKFGAEDLFKEAEGEE 996

  Fly  1865 ---------DLFNGGKDKGAESGSSAVQGTASGGMSMN-TIIENLPEL-------WSEHQYEEE 1911
                     ::....:.:.::.||||.....|.....| |:.|:.|:|       |.|...||:
Zfish   997 SEPQEMDIDEILRLAETRESDQGSSATDELLSQFKVANFTMDESTPDLDEKPGRDWDEIIPEEQ 1060

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 175/540 (32%)
chd2XP_021323365.1 CD1_tandem_CHD1-2_like 272..356 CDD:349313
CD2_tandem_CHD1-2_like 389..456 CDD:349308
DEAD-like_helicase_N 473..709 CDD:475120 77/265 (29%)
PLN03142 479..>1054 CDD:215601 190/636 (30%)
CDH1_2_SANT_HL1 1137..1225 CDD:477096
DUF4208 1455..1549 CDD:464035
PTZ00449 <1503..>1796 CDD:185628
Blue background indicates that the domain is not in the aligned region.

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