DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hel89B and chd1

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:XP_009303375.1 Gene:chd1 / 563236 ZFINID:ZDB-GENE-030131-7120 Length:1778 Species:Danio rerio


Alignment Length:620 Identity:200/620 - (32%)
Similarity:306/620 - (49%) Gaps:99/620 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  1311 QLKSDPLQARKTRDREFLDYLFNPKSIPNYKVPVPI---SVELRCYQQAGINWL---WFLNKYNL 1369
            |.|:.|     :||.:.|..  .|:.:|..|.|..|   .:|||.||..|:||:   |.  |.| 
Zfish   433 QCKTIP-----SRDCKVLKQ--RPRFVPMKKQPHYIGGEGLELRDYQLDGLNWMAHSWC--KGN- 487

  Fly  1370 HGILCDDMGLGKTLQTICILAG-DHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLR 1433
            ..||.|:||||||:|||..|.. .|.|:...     |.|::.|.:....|..|::.:   ..::.
Zfish   488 SCILADEMGLGKTIQTISFLNYLFHEHQLYG-----PFLLVVPLSTLTSWQREIQLW---APLMN 544

  Fly  1434 PLHYYGFPVGREKLRS-------DIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNG 1491
            .:.|.|....|..:|:       ....|.|:::.:|:.:.||..|...:.:.:..:||.|.:||.
Zfish   545 VVVYLGDINSRNMIRTHEWMHPQTKRLKLNILLTTYEILLKDKSFLGNVSWAFIGVDEAHRLKND 609

  Fly  1492 KTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKS 1556
            .:...|.:...|:||||:::|||:||::.|||||..|:||....:.:.|.:...:    .||:  
Zfish   610 DSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFHSWEMFEEEHGK----GRDS-- 668

  Fly  1557 SAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKD 1621
                      ...:||:::.||||||||:||.|.||.|:.|.|..|:|.:|.:.|:....::.| 
Zfish   669 ----------GYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWILTRNYK- 722

  Fly  1622 CLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDI 1686
            .|.| |...|.|          .....:..|:..|||..|: :..::......|..|.:.    :
Zfish   723 ALSK-GTKGSTS----------GFLNIMMELKKCCNHCYLI-KPPDDNEFYNRQEGLQHL----V 771

  Fly  1687 EHSAKLPALKQLLL---DCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDG 1748
            ..|.||..|.:||:   :.|          ||.|||.|:..||||:.:.|..|..   .:.||||
Zfish   772 RSSGKLILLDKLLVRLKERG----------HRVLIFSQMVRMLDILAEYLKYRQF---LFQRLDG 823

  Fly  1749 SVPASQRQDIVNNFNSDPSID-VLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRI 1812
            |:....|:..:::||:|.|.| ..||:|..||||:||..||||:..:.||||..||||..|||||
Zfish   824 SIKGEMRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 888

  Fly  1813 GQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGTSQIFDLFNGGKDKGAES 1877
            ||||.||:|||:|:.|:||:|:...|.|::..:.|:       |.|.|:        ||.. ..:
Zfish   889 GQKKQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVI-------QRMDTT--------GKTV-LHT 937

  Fly  1878 GSSAVQGTASGGMSMNTIIE-NLPELWSEHQYEEE 1911
            |::....|......::.|:: ...||:.|.:.||:
Zfish   938 GAAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQ 972

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 178/524 (34%)
chd1XP_009303375.1 CD1_tandem_CHD1-2_like 258..340 CDD:349313
CD2_tandem_CHD1-2_like 375..431 CDD:349308
PLN03142 457..>987 CDD:215601 191/589 (32%)
CDH1_2_SANT_HL1 1112..1199 CDD:477096
DUF4208 1481..1571 CDD:464035
U2AF_lg 1661..>1751 CDD:273727
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.