DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and Chd3

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster


Alignment Length:616 Identity:186/616 - (30%)
Similarity:287/616 - (46%) Gaps:109/616 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly  1348 VELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAG----DHMHRQTANLANLPSLV 1408
            ::|..:|..|::||.:.....:..||.|:||||||:||:..|..    .|...        |.|:
  Fly   265 LKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRG--------PFLI 321

  Fly  1409 ICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLR------SDIGTKC----------NL 1457
            ..|.:...:|..|:|.:..:   |..:.|.|....|..:|      .::.||.          |:
  Fly   322 SVPLSTLTNWERELELWAPE---LYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKFNV 383

  Fly  1458 VVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLEL 1522
            ::.||:.:..|..|...|.:...|:||.|.:::.::|..:.:.:.:..::|:|:|||:|||:.||
  Fly   384 MLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLEEL 448

  Fly  1523 WSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDV 1587
            :.|.:||..|.....:.|...|:          ..:||::     ::.||..:.|.:|||:|.||
  Fly   449 FHLLNFLSSGKFNDLQTFQAEFT----------DVSKEEQ-----VKRLHEILEPHMLRRLKADV 498

  Fly  1588 LKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYL 1652
            ||.:|||....:..|||.:|.:.|:....|:.| .|::.|.....|::        :|...||  
  Fly   499 LKSMPPKSEFIVRVELSSMQKKFYKHILTKNFK-ALNQKGGGRVCSLL--------NIMMDLR-- 552

  Fly  1653 QNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRAL 1717
             ..||||.|....:||.|...|.| ...|||  .:.|.||..|.::|       :......||.|
  Fly   553 -KCCNHPYLFPSAAEEATISPSGL-YEMSSL--TKASGKLDLLSKML-------KQLKADNHRVL 606

  Fly  1718 IFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSID--VLLLTTMVGGL 1780
            :|.|:..||:::|..|   ......|.|:|||:....||..::.|| ||..:  |.||:|..|||
  Fly   607 LFSQMTKMLNVLEHFL---EGEGYQYDRIDGSIKGDLRQKAIDRFN-DPVSEHFVFLLSTRAGGL 667

  Fly  1781 GLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTAN 1845
            |:||..|||||..:.||||..|:||..||||:||||.|.:||.:|.||:||:||.:.|.|::..:
  Fly   668 GINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHKMMLTH 732

  Fly  1846 TVVSAENASLQT------------MGTSQIFDLFNGGKDKGAESGSSAVQGTASGGMSMNTIIEN 1898
            .||......:.|            .||.   |||..||.:.......||.....   ..|..||.
  Fly   733 LVVRPGMGGMTTNFSKDELEDILRFGTE---DLFKDGKSEAIHYDDKAVADLLD---RTNRGIEE 791

  Fly  1899 LPELWS----------------EHQYEEEYD 1913
             .|.|:                :|:..::|:
  Fly   792 -KESWANEYLSSFKVASYATKEDHEEHDDYN 821

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 168/522 (32%)
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CD_CSD 82..146 CDD:475127
CD2_tandem_CHD3-4_like 176..230 CDD:349309
PLN03142 266..>768 CDD:215601 176/556 (32%)
Blue background indicates that the domain is not in the aligned region.

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