DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hel89B and chd1l

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_956607.1 Gene:chd1l / 393283 ZFINID:ZDB-GENE-040426-892 Length:1026 Species:Danio rerio


Alignment Length:596 Identity:183/596 - (30%)
Similarity:279/596 - (46%) Gaps:96/596 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1347 SVELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICP 1411
            ::.||.||..|:.||....|.....||.|:||||||.|||.:||    :.:.:...|.|.||:||
Zfish    32 AIHLRPYQLDGVKWLSLCMKNQQGCILGDEMGLGKTCQTISLLA----YARGSLKMNGPFLVLCP 92

  Fly  1412 PTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGT--KCNLVVASYDTVRKDIDFFSG 1474
            ..:..:|..|:|:|....||   :.|.|....|.:|:.::.:  :.::::.:|:...||..:...
Zfish    93 LAVLENWRQELERFCPSLSV---ICYTGDKEKRAELQQNLKSDPRFHVLLTTYEMCLKDARYLKS 154

  Fly  1475 IHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTE-- 1537
            ..:...|:||.|.:||.::...:.:|......|::|:|||||||:.|::||..|:.|.....|  
Zfish   155 WKWKILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVFLPEAV 219

  Fly  1538 KQFVQRF----SRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQD 1598
            :.||..:    :.|.|                  ::.||:.:.||||||||.:|..:||.|....
Zfish   220 EDFVNAYADIQTEPAL------------------VDELHQVLQPFLLRRVKAEVAAELPKKTELV 266

  Fly  1599 LLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLV- 1662
            :...||.||.|.|:....:.|             .....:.|.||.:...|..|:...:||.|. 
Zfish   267 VFHGLSALQKRYYKAILMRDL-------------DAFRTDQSTKTRLLNVLMQLRKCVDHPYLFD 318

  Fly  1663 ------LRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQ 1721
                  ....|.|.:.:.:|:|.:|.|..::...                       |..|:|.|
Zfish   319 GVEPEPFEMGEHLVEASGKLSLLDSMLAYLQEGG-----------------------HHVLLFSQ 360

  Fly  1722 LKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTG 1786
            :..||||::..|..|   ..:|.||||||...:|...:.|| |...:.:.||:|..||:|:|||.
Zfish   361 MTRMLDILQDYLEYR---GYSYERLDGSVRGEERNLAIKNF-STKDVFIFLLSTKAGGVGMNLTA 421

  Fly  1787 ADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAE 1851
            |||||||:.|:||..||||..|||||||.:.|.|.||:.|:::||.|......|:...:||:...
Zfish   422 ADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEG 486

  Fly  1852 NASLQTMGTS-----QIFDLFNGGKDKGAESGSSAVQ--------GTASGGMSMNTIIENLPELW 1903
            ..||.....|     |:.::...|.||...|..|:||        |.:..|..:..  |...:| 
Zfish   487 RFSLLDQAQSAASGLQLSEILKFGVDKLLSSEESSVQDVDLQLILGQSRDGQWLTD--EEHAKL- 548

  Fly  1904 SEHQYEEEYDL 1914
            :|...||:.|:
Zfish   549 NESNEEEDEDM 559

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 164/516 (32%)
chd1lNP_956607.1 PLN03142 35..>547 CDD:215601 178/578 (31%)
DEAH box 163..166 2/2 (100%)
Regulatory linker segment (RLS). /evidence=ECO:0000250|UniProtKB:Q86WJ1 594..628
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 606..655
Required for ATPase activity. /evidence=ECO:0000250|UniProtKB:Q86WJ1 608..666
Macro_Poa1p-like_SNF2 709..859 CDD:394880
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 877..929
BRCT 931..1016 CDD:469589
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.