DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hel89B and CG4049

DIOPT Version :9

Sequence 1:NP_001287351.1 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_611885.3 Gene:CG4049 / 37860 FlyBaseID:FBgn0034976 Length:1669 Species:Drosophila melanogaster


Alignment Length:1290 Identity:259/1290 - (20%)
Similarity:420/1290 - (32%) Gaps:478/1290 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   921 QQTTSEQSAYHVSAQAALAGAICALHCLPDKLNPVVKPLMESIK--REQCLQLQQLSAEFLVHLM 983
            ||...:|...|......        |.|..:..|...|..:..:  ::|..|..||..:  .|..
  Fly    59 QQHPQQQPEQHPEQHPQ--------HPLHSQQQPQQHPQQQPQQHPQQQTQQPPQLQPQ--QHPQ 113

  Fly   984 DQVCDRNPSPNSKILNNLCTLLRSDPEFTPKLVMPLETLKQTPVSSEVINNCVYYGILTLALQQT 1048
            .|:....|.|.|..:.....:....||:.|:...|:|..:.....:||..|.|.||         
  Fly   114 AQIQPPIPVPISTPMEGTMEVPVKMPEYCPETSQPVEPDRVINPLAEVAKNTVPYG--------- 169

  Fly  1049 VTTTNTRSGAGG--------ATTPTATTAPRGPGRPPTGEILSATNATAHIELKAQQAKEAEAKQ 1105
                :.|..:.|        .:...|........|....::::..|...  ...|.|.:|:|   
  Fly   170 ----HKRKNSAGEDQAANKKLSMAAAEEKKNSHLRKNIRDVMNENNLDT--TTLAAQREESE--- 225

  Fly  1106 CRIQRLGAACAIEKLCRIFGEQIIEKVAVFQHLMFGKVEQFVKEAYDWRLGSLLPDLGVCNELVS 1170
                ||......:|..|...:|::.| .:|:.|...:.|.                         
  Fly   226 ----RLARVAGQQKSMREIQKQVVHK-QIFRILQLDESEG------------------------- 260

  Fly  1171 SMQLIETAAPHLHVALHPQMFALLPSLGFIVCHP---------------------LKAVRHMAAR 1214
                ||:.|....|..||.           |..|                     ::.|.|..| 
  Fly   261 ----IESCAVANPVEHHPP-----------VDFPEEEIASDTFDDSNSSSLSGGSIEDVLHKGA- 309

  Fly  1215 CIAVLAEIDACQTMQFVV-----HDLLPLLGKIEQLIERQGAIEAIERVVSRLQIKVVPYIVLLV 1274
                     :.|..:.|.     .|...||.:.|:..:.:...|:.:...|.:.:|.: |.|   
  Fly   310 ---------SVQPSEVVTIDDSSDDDCILLSEEEEEEDDEDLNESDDATNSGMHVKDI-YNV--- 361

  Fly  1275 VPLLGAMSDPDESVRLLSTHCFANLVQLMPLDGKTEQLKSDPLQARKTRDREFLDYLFNPKSIPN 1339
                     |||:.::        :|.:...:|: |.|                           
  Fly   362 ---------PDENGQV--------VVNMAHPEGE-ETL--------------------------- 381

  Fly  1340 YKVPVPISVELRCYQQAGINWLW-----FLNKYNLHG----ILCDDMGLGKTLQTI--CILAGDH 1393
            |..| .|:..::.:|..|:.:|:     ...:||...    ||...||||||||.:  |.:...|
  Fly   382 YLAP-QIAKVIKPHQIGGVRFLYDNIIESTRRYNKSSGFGCILAHSMGLGKTLQVVSFCDIFLRH 445

  Fly  1394 MHRQTANLANLPSLVIC----------------------------------------PPTLTG-- 1416
            ...:|         |:|                                        ..|||.  
  Fly   446 TSAKT---------VLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRNFDIFVLNDQQKTLTARA 501

  Fly  1417 ----HWV---------YEVEKFL---------DQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVV 1459
                :||         ||:.:.|         .:|||:|       |.|.:. .||:   .||| 
  Fly   502 KVILNWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVIR-------PDGMDS-SSDL---MNLV- 554

  Fly  1460 ASYDTVRK---DIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLE 1521
              |:.:.|   |:          .:.||||.|||.....|.|:|.::...|::|:|.|:|||:||
  Fly   555 --YEALVKPGPDL----------VICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLE 607

  Fly  1522 LWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKED 1586
            .|.:.||:.|.:|||..:|...|.|||.:.:...|:..:.:........||..:|.|:.||....
  Fly   608 YWCMVDFVRPNYLGTRTEFCNMFERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQRRSHTV 672

  Fly  1587 VLKDLPPKITQDLLCELSPLQLRLYEDFSN-----------------------------KHLKDC 1622
            :...||.|....:|.:::..|.:||:.|..                             ..||.|
  Fly   673 LQLTLPQKYEYVILVKMTAFQRKLYDTFMTDVVRTKAFPNPLKAFAVCCKIWNHPDVLYNFLKKC 737

  Fly  1623 -------LDKLGDSSSASMVTE---------------------------------------NLSA 1641
                   :|:.....:|:.:.|                                       |:.|
  Fly   738 ETDLDLEIDEEVTKGAATPIVEPSADSSLSLASPLEKKINGSGDPINSIETFSKAENQTLFNIPA 802

  Fly  1642 KTHIF---------------QALRY-------------------------------------LQN 1654
            .:.:.               :.|.|                                     .::
  Fly   803 SSDLNAKYLNKSPSFYDEKPEPLNYGSFGSEGKNNYWMDSSILPKPGCVEVIKQTDTNMSSNFES 867

  Fly  1655 VCNHPKLVLRQSEELTKV--TSQLALSNSSLDD--------------IEHSAKLPA---LKQLL- 1699
            :....::|...:.|:..|  |.|...||:.||:              .::|:.:.|   .|:|| 
  Fly   868 ITGSSEIVDLDTNEIKTVETTIQAPCSNNQLDNGCNAGKPSEWNAAGSKNSSGVAAAEPFKKLLK 932

  Fly  1700 -------LDCGIGVQTE--------SVSQHRALIFCQLKAMLD------IVEQDLLRRHLPSV-- 1741
                   ..|...|...        |.|....:.||.||..|:      :..|.||..:|..|  
  Fly   933 SKQRNEEFSCSWAVDLMKNYVSGLISNSPKMEIFFCILKESLNLGDRILLFSQSLLTLNLLEVYL 997

  Fly  1742 ----------------TYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTV 1790
                            :|.|||||..:.:|:.:||.||::.::.:.|::|..|.||:|||||:.|
  Fly   998 KSSYVPGSNQLWTKNSSYFRLDGSTSSQERERLVNEFNANSNVKLFLISTRAGSLGINLTGANRV 1062

  Fly  1791 IFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAEN--A 1853
            |..:..|||..|.||:.|.:|.||.|...|||::....||:||...|..|...::.:|...|  |
  Fly  1063 IIFDASWNPCHDTQAVYRIYRYGQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIVDECNPEA 1127

  Fly  1854 SLQTMGTSQIFDLFNGGKDKGAE----------SGSSAVQGTASGGMSMNTIIEN 1898
            .|.....:.:...::..:|...|          .||.:.:|:..|..:|:....|
  Fly  1128 HLSMKDITNLCQDYDSDEDTVEEVNKSTGDLSKPGSPSEEGSKPGSANMSPNASN 1182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_001287351.1 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:288874 44/226 (19%)
HEAT repeat 1234..1261 CDD:293787 5/26 (19%)
HEAT repeat 1269..1298 CDD:293787 5/28 (18%)
SNF2_N 1353..1662 CDD:278600 98/513 (19%)
DEXDc 1370..1514 CDD:238005 50/216 (23%)
Helicase_C 1689..1813 CDD:278689 50/166 (30%)
CG4049NP_611885.3 SNF2_N 394..730 CDD:278600 88/368 (24%)
DEXDc 420..598 CDD:238005 49/210 (23%)
HELICc 958..1093 CDD:238034 46/134 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467218
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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