DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and Ercc6l2

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:XP_038952187.1 Gene:Ercc6l2 / 361197 RGDID:1561537 Length:1561 Species:Rattus norvegicus


Alignment Length:655 Identity:185/655 - (28%)
Similarity:290/655 - (44%) Gaps:127/655 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1311 QLKSDPLQ----ARKTRDRE----FLDYLFNPKSIPNYKVP--------------VPISVE--LR 1351
            |.|..|||    .:.|:|..    |.|........|:.|:|              :|.::.  ||
  Rat    59 QEKKIPLQRLQEVKSTKDHSRSLIFDDEDLEKPYFPDQKIPSLVSAFQLSEDGDSIPYTINRYLR 123

  Fly  1352 CYQQAGINWLWFLNKYNLHG---ILCDDMGLGKTLQTICILAG--------------------DH 1393
            .||:.|..   ||.::.:.|   ||.||||||||:|.|..||.                    ..
  Rat   124 DYQREGAQ---FLYRHYIKGRGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLKS 185

  Fly  1394 MHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLV 1458
            |.:::::.|....|::.|.::..:|..|    ||.....|....:|.....|..|.. ..||.:.
  Rat   186 MKKESSSTARKMFLIVAPLSVLYNWKDE----LDTWGYFRVTVLHGSKKDNELTRLK-QRKCEIA 245

  Fly  1459 VASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELW 1523
            :.:|:|:|..::..:.:.::..::||.|.|:|...:.::.:|.:|...|:.|:||.:|||:.|||
  Rat   246 LTTYETLRLCLEELNSLEWSAIIVDEAHRIRNPNARVTEVMKAVKCKVRIGLTGTILQNNMKELW 310

  Fly  1524 SLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVL 1588
            .:.|:.:||.||:...|.::||.|:...:...::.:|...|..||..|.:::..:.|||.|..:.
  Rat   311 CVMDWAVPGLLGSRIHFKKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGYFLRRTKTLIK 375

  Fly  1589 KDLPPKITQDLLCELSPLQLRLY------EDFS--------------NKHLKDC--LDKLGDSSS 1631
            ..||.|..:.:...|:..|..:|      ||.:              .|..|.|  .:..||   
  Rat   376 GQLPKKEDRMVYSSLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSQGD--- 437

  Fly  1632 ASMVTENLSAKTHIFQALRYLQNVCNHPKLV-----LRQSEELTKVTSQLALSN----------- 1680
                    :.:|.....|..||.|.||..|:     .:..|.|.|.......|.           
  Rat   438 --------TVRTLCLSYLTVLQKVANHVALLQAASTSKHQETLIKRICDQVFSRFPDFVQKSKDA 494

  Fly  1681 --SSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHR--ALIFCQLKAMLDIVEQDLLRRHLPSV 1741
              .:|.|.::|.|:..|.|||         ....:||  .|:|.....:||:::|..:...|   
  Rat   495 AFETLSDPKYSGKMKVLDQLL---------NHFRKHRDKVLLFSFSTKLLDVLQQYCMASGL--- 547

  Fly  1742 TYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAM 1806
            .|.|||||..:.:|..||..|||...:::.|::||.||||||..||:.||..:..|||..||||:
  Rat   548 DYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFIGANVVILFDPTWNPANDLQAI 612

  Fly  1807 DRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGTSQIFDLFNGGK 1871
            |||:||||.:.|.|:|||:..::||.:...|.:|......||.:|||       .:.|:...|.|
  Rat   613 DRAYRIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENA-------KRYFEAVQGSK 670

  Fly  1872 DKGAE 1876
            :...|
  Rat   671 EHRGE 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 166/587 (28%)
Ercc6l2XP_038952187.1 Tudor_SF 17..72 CDD:470623 5/12 (42%)
HepA <47..649 CDD:440319 176/620 (28%)
DEXHc_ERCC6L2 122..369 CDD:350763 71/254 (28%)
VIGSSK <1132..1155 CDD:464308
Blue background indicates that the domain is not in the aligned region.

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