DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and Smarca1

DIOPT Version :9

Sequence 1:NP_001287351.1 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_001258119.1 Gene:Smarca1 / 317575 RGDID:1561046 Length:1062 Species:Rattus norvegicus


Alignment Length:779 Identity:235/779 - (30%)
Similarity:350/779 - (44%) Gaps:135/779 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly  1217 AVLAEIDACQTMQFVVHDLLPLLGKIEQLIERQGAIEAI---------ERVVSRLQIKVV----- 1267
            |.:|..||..|: .|:.|..|.....::......|.||.         |::.|..|:|:.     
  Rat    10 ATVAASDARATI-VVLEDEQPGPSTFKEEGAAAAATEATTATEKGEKKEKITSPFQLKLAAKTSK 73

  Fly  1268 -------PYIVLLV-VPLLGAMSDPDESVR----LLSTHCFANLVQ-------LMPLDGK--TEQ 1311
                   .|...:| :||     ..|.:.|    |..|..||:.:|       ..||:.|  ..:
  Rat    74 SEKEMDPEYEEKMVNIPL-----KADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLARPR 133

  Fly  1312 LKSDPLQA---------RKTRDREFLDYLFNPKSIPNYKVPVPISVE------LRCYQQAGINWL 1361
            :|.|..|:         |:|...|..:.|...:...|..|...:|..      ||.||..|:|||
  Rat   134 VKKDDKQSLISVGDYRHRRTEQEEDEELLSESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWL 198

  Fly  1362 WFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFL 1426
            ..|.:..::|||.|:||||||||||.:|.....:|....    |.:|:.|.:...:|:.|.::::
  Rat   199 ISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPG----PHMVLVPKSTLHNWMNEFKRWV 259

  Fly  1427 DQGSVLRPLHYYGFPVGREKLRSD--IGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIK 1489
            ..   ||.:.:.|....|.....|  :..:.::.|.||:.|.|:...|...|:.|.|:||.|.||
  Rat   260 PS---LRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIK 321

  Fly  1490 NGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDA 1554
            |.|:|.|:.::..|:.:||:|:|||:|||:.|||:|.:||:|....:...|...|        |.
  Rat   322 NEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWF--------DT 378

  Fly  1555 KSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHL 1619
            |:...:|:    .:|.||..:.||||||:|.||.|.||||....:...||.:|...|    .|.|
  Rat   379 KNCLGDQK----LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWY----TKIL 435

  Fly  1620 KDCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLD 1684
            ...:|.|..|....        |..:...|..|:..||||.|...........|.:..:||    
  Rat   436 MKDIDVLNSSGKMD--------KMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSN---- 488

  Fly  1685 DIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGS 1749
                |.|:.||.:||    ..::.:.   .|.|||.|:..:|||:|...:.|   ...|.||||.
  Rat   489 ----SGKMVALDKLL----ARIKEQG---SRVLIFSQMTRLLDILEDYCMWR---GYEYCRLDGQ 539

  Fly  1750 VPASQRQDIVNNFNS-DPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIG 1813
            .|..:|::.:..||: :.|..:.:|:|..||||:||..||.||..:.||||..||||||||||||
  Rat   540 TPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 604

  Fly  1814 QKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVS------------AENASLQTM--GTSQIF 1864
            |||.|.|:||||.|::||:|:...:.|:...:.|:.            |:...||.:  |.:.:|
  Rat   605 QKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVF 669

  Fly  1865 -------------DLFNGGKDKGAESGSSAVQGTASGGMSMNTIIENLPELWSEHQYEEEYDLG 1915
                         .:...|:.|.||......:...|...:....:|.....:....|.|:..||
  Rat   670 ACKESELTDEDIVTILERGEKKTAEMNERMQKMGESSLRNFRMDLEQSLYKFEGEDYREKQKLG 733

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_001287351.1 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:288874
HEAT repeat 1234..1261 CDD:293787 6/35 (17%)
HEAT repeat 1269..1298 CDD:293787 9/33 (27%)
SNF2_N 1353..1662 CDD:278600 106/310 (34%)
DEXDc 1370..1514 CDD:238005 49/145 (34%)
Helicase_C 1689..1813 CDD:278689 52/124 (42%)
Smarca1NP_001258119.1 PLN03142 64..1061 CDD:215601 222/724 (31%)
DBINO <96..114 CDD:290603 5/17 (29%)
DEXDc 207..346 CDD:238005 49/145 (34%)
Helicase_C 489..604 CDD:278689 52/124 (42%)
HAND 750..848 CDD:286232
SANT 851..890 CDD:238096
SLIDE 905..1017 CDD:286233
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D61251at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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