DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and Chd1

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_001100935.1 Gene:Chd1 / 308215 RGDID:1306794 Length:1711 Species:Rattus norvegicus


Alignment Length:621 Identity:208/621 - (33%)
Similarity:309/621 - (49%) Gaps:100/621 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1311 QLKSDPL---QARKTRDREFLDYLFNPKSIPNYKVPVPISVELRCYQQAGINWL---WFLNKYNL 1369
            |.|:.|.   :..|.|.| |:.....|..|..::     .:|||.||..|:|||   |.  |.| 
  Rat   443 QSKTTPFKDCKVLKQRPR-FVALKKQPSYIGGHE-----GLELRDYQLNGLNWLAHSWC--KGN- 498

  Fly  1370 HGILCDDMGLGKTLQTICILAG-DHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLR 1433
            ..||.|:||||||:|||..|.. .|.|:...     |.|::.|.:....|..|::.:..|   :.
  Rat   499 SCILADEMGLGKTIQTISFLNYLFHEHQLYG-----PFLLVVPLSTLTSWQREIQTWASQ---MN 555

  Fly  1434 PLHYYGFPVGREKLRS-------DIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNG 1491
            .:.|.|....|..:|:       ....|.|:::.:|:.:.||..|..|:::.:..:||.|.:||.
  Rat   556 AVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKND 620

  Fly  1492 KTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRD-AK 1555
            .:...|.:...|:||||:::|||:||::.|||||..|:||          ::||    |..| .:
  Rat   621 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP----------EKFS----SWEDFEE 671

  Fly  1556 SSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLK 1620
            ...|.:|.|   ..:||:::.||||||||:||.|.||.|:.|.|..|:|.||.:.|:....::.|
  Rat   672 EHGKGREYG---YASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYK 733

  Fly  1621 DCLDKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLDD 1685
             .|.| |...|.|          .....:..|:..|||..|: :..:.......|.||.:.    
  Rat   734 -ALSK-GSKGSTS----------GFLNIMMELKKCCNHCYLI-KPPDNNEFYNKQEALQHL---- 781

  Fly  1686 IEHSAKLPALKQLLL---DCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLD 1747
            |..|.||..|.:||:   :.|          :|.|||.|:..||||:.:.|..|..|   :.|||
  Rat   782 IRSSGKLILLDKLLIRLRERG----------NRVLIFSQMVRMLDILAEYLKYRQFP---FQRLD 833

  Fly  1748 GSVPASQRQDIVNNFNSDPSID-VLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHR 1811
            ||:....|:..:::||::.|.| ..||:|..||||:||..||||:..:.||||..||||..||||
  Rat   834 GSIKGELRRQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR 898

  Fly  1812 IGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTVVSAENASLQTMGTSQIFDLFNGGKDKGAE 1876
            |||||.||:|||:|:.|:||.|:...|.|::..:.|:       |.|.|:        ||.. ..
  Rat   899 IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI-------QRMDTT--------GKTV-LH 947

  Fly  1877 SGSSAVQGTASGGMSMNTIIE-NLPELWSEHQYEEE 1911
            :||:....|......::.|:: ...||:.|.:.||:
  Rat   948 TGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQ 983

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 185/522 (35%)
Chd1NP_001100935.1 CD1_tandem_CHD1-2_like 268..352 CDD:349313
CD2_tandem_CHD1-2_like 385..441 CDD:349308
DEAD-like_helicase_N 458..695 CDD:475120 86/270 (32%)
PLN03142 462..>998 CDD:215601 201/601 (33%)
CDH1_2_SANT_HL1 1122..1208 CDD:477096
PTZ00121 <1292..1574 CDD:173412
DUF4208 1408..1498 CDD:464035
PHA03420 1591..>1691 CDD:177648
Blue background indicates that the domain is not in the aligned region.

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