DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and rrp1

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_594246.1 Gene:rrp1 / 2542440 PomBaseID:SPAC17A2.12 Length:897 Species:Schizosaccharomyces pombe


Alignment Length:872 Identity:200/872 - (22%)
Similarity:331/872 - (37%) Gaps:267/872 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1180 PHLHVALHPQMFALLPSLGFIVCHP-LKAVRHMAARCIAVLAEIDACQTMQFVVHDLLPLLGKIE 1243
            |...:...|...:.|||:......| :.::.|                |...|.:|:..:||..:
pombe   105 PPTRLTSTPSNSSSLPSIPSSSSTPSISSIPH----------------TTSSVSNDIPSVLGSSD 153

  Fly  1244 QLIERQGAIEAIERVVSRLQIKVVPYIVLLVVPLLGAMSDPDESVRL----LSTHCFA------- 1297
            ..|:    ::..|.:...........:..|..||     .|..|..|    :||:.|.       
pombe   154 HPID----LDNPEHLTPPSSFITAKQLSRLPTPL-----PPPSSSSLPTGTISTNSFCPYERKVQ 209

  Fly  1298 ------NLVQLM------PLDGKTEQLKSDPLQARKTRDREFLDYLFNPKSIPNYKVPVPISVEL 1350
                  .|.||:      |.|....|||::.:|:                        ..:.|.|
pombe   210 PEHVTKELHQLLQHNTPSPFDTIDLQLKNEQVQS------------------------AGLLVSL 250

  Fly  1351 RCYQQAGINWLWFLNKYN-LHGILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTL 1414
            ..:|..|..|:..:.:.: ..|::.||||||||:|||.:|    :.:::.:.....:|::....|
pombe   251 LPHQVEGHAWMESMEQSSKCGGVMADDMGLGKTIQTIALL----LTQKSQDPLRKTNLIVVSVAL 311

  Fly  1415 TGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNL---VVASYDTV----------R 1466
            ...|..|:...:.....|....::|            .||.||   .::.||.|          .
pombe   312 LHQWAEELSTKVHPSKKLSVYIHHG------------STKKNLDSYELSQYDVVLTTYSMLAYEM 364

  Fly  1467 KDIDFFSG----------------IHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPI 1515
            |..|.|:.                ..:...||||.|.|:|..|.::|...:|.|.:|..||||||
pombe   365 KQNDAFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDAKYRWCLSGTPI 429

  Fly  1516 QNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLL 1580
            ||::.|.:||..||..........|.:..|||:.|.|     |...||   |::.|...:...:.
pombe   430 QNHIDEFYSLLKFLRIKPYCVWSLFAKDISRPLKSYR-----ADIVEA---ALKRLRILLASTVF 486

  Fly  1581 RRVKED-----VLKDLPPKITQDLLCELSPLQLRLYED------------FSNKH---------- 1618
            ||.||.     .:.:||||..:.:...|.|.:..||.:            |:|.|          
pombe   487 RRTKETRVNNLPIVNLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLV 551

  Fly  1619 -------------------------------------------------LKD-----CLD----- 1624
                                                             |:|     |||     
pombe   552 SLLRLRQFCCHPWLVKSSSLDNSFRIRDSENVRNACKSLDPLTIERIATLQDFNCSVCLDPCLAP 616

  Fly  1625 ---------------------KLGDSSSASMVTENLSAKTHIFQ-----------------ALRY 1651
                                 |.|.||:::::.:....:.:|.|                 :|:.
pombe   617 VFIIPCGHFTCQECMSMLVGQKYGSSSTSTIIAKCPMCRGNIVQDSLVDATILQAIHGPLNSLKQ 681

  Fly  1652 L-----QNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESV 1711
            |     |:......:.||....:.::.::.....:|  :.:.|:||...:|.:||. ||    |.
pombe   682 LELDMNQSFSEQESIKLRWENRIDQMFTKKFGKRAS--EWKSSSKLNQARQTILDI-IG----SK 739

  Fly  1712 SQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLLTTM 1776
            ...:.|::.|....|.:|...|   .|.::.::|.||::.|:|||..:::||:|..:.|:|::..
pombe   740 RNEKILVYSQFSQYLCLVSHML---KLENIRHVRYDGTMSANQRQKSLHSFNNDKDVLVMLVSLK 801

  Fly  1777 VGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQ-KFK 1840
            .|.:|||||.|:.||..|..:||..:.||:||.||:||:|.|.|||.||::::||:|:.:| |.:
pombe   802 AGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTVYRFITKDTIEERIVSVQRKKR 866

  Fly  1841 ILTANTVVSAENASLQTMGTSQIFDLF 1867
            .|....:.|.||..|..:...::..||
pombe   867 QLVKEALDSNENNPLSRLDKEELLYLF 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 162/666 (24%)
rrp1NP_594246.1 HepA <244..874 CDD:440319 162/663 (24%)
RING_Ubox 603..663 CDD:473075 10/59 (17%)
Blue background indicates that the domain is not in the aligned region.

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