DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and rrp2

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_596602.1 Gene:rrp2 / 2540464 PomBaseID:SPBC23E6.02 Length:1040 Species:Schizosaccharomyces pombe


Alignment Length:746 Identity:168/746 - (22%)
Similarity:280/746 - (37%) Gaps:221/746 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1296 FANLVQLMPLDGKTEQLKSDPLQARKTRDREFLDYLFNPKSIPNYKVPVPISVELRCYQQAGINW 1360
            |.|:......|...::::.|..|..:...::..:.|.|..:| ....|..:...|..:|:.|:.|
pombe   337 FHNIEGFNLSDSNNQKVQDDQQQQLEELFKDLDEQLVNDPTI-REGTPAGLIPTLMEHQKEGLMW 400

  Fly  1361 LWFLNKYNLH-GILCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEK 1424
            |..|.:.:.. |||.||||||||:|.:.:|    :.|...:.:...:|:|.|.:|...|..|:. 
pombe   401 LKRLEESSKKGGILADDMGLGKTVQALALL----VTRPPESKSVKTTLIITPVSLLQQWHNEIL- 460

  Fly  1425 FLDQGSVLRPLH------YYG----FPVGREKLRSDIGTKCNLVVA-------SYDTVRKD---- 1468
                 :.:.|.|      ::|    ..:..:.:..||......|:|       :||...:|    
pombe   461 -----TKIAPSHRPTVYIHHGSSKKHKIAEQLMSYDIVLTTYNVIAYEFKNKMAYDKSIEDNAPI 520

  Fly  1469 -----IDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDF 1528
                 :.||....:. .:|||...|||..|.:::....|::.:|..|||||:||.|.|.:||..|
pombe   521 KKFEHLPFFEAEWYR-VILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKF 584

  Fly  1529 LMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLK---- 1589
            |..........|.:.|:.| |||....|:..::..|:|.         ..||||.|...:.    
pombe   585 LRIKPYSDWSSFSKDFTIP-LSSNINTSAPMKRFRGLLK---------AVLLRRTKNTKIDGKPI 639

  Fly  1590 -DLPPKITQDLLCELSPLQLRLYEDFSN-------KHLKDCLDKLGDSSSASMVTENLSAKTH-- 1644
             .||||.......:||..::..|....:       |:|::           ..:|      ||  
pombe   640 LTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQE-----------GTIT------THYG 687

  Fly  1645 -IFQALRYLQNVCNHPKL----------------------------------------------- 1661
             :...|..|:..|.||.|                                               
pombe   688 SLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLKLIETLQCSLCMDV 752

  Fly  1662 ---------------------VLRQSEELTKVTSQLALSN-----SSLDDIE----------HSA 1690
                                 |:..||::.|.||...:|.     ....|.|          :|.
pombe   753 VAELLIIVPCGHFLCRECLTHVITSSEDMAKQTSNENISPKCSVCEEYIDTERLLSYALFRRYSG 817

  Fly  1691 KLPALKQLLLDCGIGVQTESVSQ------------------------------------------ 1713
            ..|     ::|....::||::|:                                          
pombe   818 MAP-----IVDADNKLRTENISELLPKQYSNILENRQMGMKIFTDPKHWTTSTKIEKALNAVKEI 877

  Fly  1714 ------HRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLL 1772
                  .:.|||.|..:.|::......:.   .:.||...|.:..::|...:.||..||::.|||
pombe   878 IKKQPTDKILIFSQFVSFLELFTVPFRQE---GIKYLMYTGGLSTAERNQALINFEVDPNVRVLL 939

  Fly  1773 LTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQ 1837
            ::...|.:|||||.|:.||.::..|||..:.||:||||||||.|.||:.|::|.|::||:::.||
pombe   940 ISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILRIVTNNTIEERVLALQ 1004

  Fly  1838 KFKILTANTVVSAEN-ASLQTMGTSQIFDLF 1867
            ..|....::.:..:. ..:..:.|.::..||
pombe  1005 DRKRELIDSALGEKGLREISRLNTKELSFLF 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 157/679 (23%)
rrp2NP_596602.1 HepA <380..1016 CDD:440319 157/681 (23%)
RING_Ubox 742..812 CDD:473075 9/69 (13%)
Blue background indicates that the domain is not in the aligned region.

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