DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and rad-54.B

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_001255913.1 Gene:rad-54.B / 190999 WormBaseID:WBGene00013792 Length:833 Species:Caenorhabditis elegans


Alignment Length:632 Identity:185/632 - (29%)
Similarity:279/632 - (44%) Gaps:119/632 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1279 GAMSDPDESVRLLSTHCFANLVQLMPLDGKTEQLKSDPLQARKTRDREFLDYLFNPKSIPNYKVP 1343
            |..|.|...:.|.......:...:.||.|  .:..|....:..|...:...::.|.:.|.:.|..
 Worm   131 GGFSSPFLGIELPKPLSKRSATFVPPLIG--SESSSSGGSSSSTIQEKIPPFILNEQDILDRKTT 193

  Fly  1344 VPISVE------LRCYQQAGINWLW-------FLNKYNLHGILCDDMGLGKTLQTI----CILAG 1391
            ..::|:      ||.:|::||.:::       ..|......||.|||||||:|||:    .:|.|
 Worm   194 SAVTVDTRFARHLRPHQKSGIQFIFDRLRRGSGKNGGGGGAILADDMGLGKSLQTMAATWALLKG 258

  Fly  1392 DHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCN 1456
            ....:|.||    ..|:|.|.:|..:|..|.:|:   ..::|      ||.......:||.|..:
 Worm   259 SKTAQQLAN----SCLIIVPSSLVNNWKAEFDKW---WRLMR------FPAVIALTANDITTYQS 310

  Fly  1457 LV------VASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPI 1515
            .:      |.|||..::.::....|.|:..|.||||.:||...|..|.:..|:...||||:|||:
 Worm   311 TIKLMPYLVISYDLAQRHVEKLKIIRFDVMVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTGTPM 375

  Fly  1516 QNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLL 1580
            ||:..|.:||.||:.|...|:..:|     |.:.|.|.               |.|:..:...:|
 Worm   376 QNDFEEFYSLLDFVRPSVFGSIVEF-----RKMCSDRP---------------EQLNELIDECML 420

  Fly  1581 RRVKEDV-LKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTH 1644
            ||...|| ||.||.|....|.|..||:|       .:.|.:.|....||:.|.            
 Worm   421 RRTAADVDLKHLPEKHEYILFCAASPIQ-------KHVHSEICDYMTGDALSL------------ 466

  Fly  1645 IFQALRYLQNVCNHPKLV---LRQSEELTKVTSQ----LALSNSSL--DDIEHSAKLPALK---- 1696
            ||    :.:.:.|||||:   ||:..|.:|....    ||...:.:  ..::.|.||.||.    
 Worm   467 IF----FARQLANHPKLLLDNLREKTEKSKAHKHSPLLLAFDGAHMPRGGVKESGKLTALVDMIK 527

  Fly  1697 --QLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIV 1759
              :||.:|             .:|.......||:::|  |..:| :...|||||......||.:|
 Worm   528 CFRLLQEC-------------TVIVSNYIETLDMIQQ--LCEYL-NFKVLRLDGKTQVPDRQKLV 576

  Fly  1760 NNFNS--DPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYR 1822
            ..||.  ||| ::.||:|..||:||||.||..::..:.||||..|.|||.|..|.||.:..::||
 Worm   577 RTFNDHRDPS-NIFLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYR 640

  Fly  1823 LITRNSLEEKIMGLQKFKILTANTVVSAENA--SLQTMGTSQIFDLF 1867
            |||..::|||::..| .|......|:.|...  ::.|.....:.|:|
 Worm   641 LITTGTIEEKMLQRQ-IKKTGLGCVIDAIEVGDTIATFTDEDLKDIF 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 169/547 (31%)
rad-54.BNP_001255913.1 HepA <206..661 CDD:440319 167/528 (32%)
Blue background indicates that the domain is not in the aligned region.

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