DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and rad-54.L2

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_501545.1 Gene:rad-54.L2 / 177706 WormBaseID:WBGene00007761 Length:1274 Species:Caenorhabditis elegans


Alignment Length:756 Identity:158/756 - (20%)
Similarity:272/756 - (35%) Gaps:236/756 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1317 LQARKTRDREFLDYLFNPKSIPNYKVPVPISVELRCYQQAGINWLW-----FLNKYNLHG----I 1372
            |::.:.::...|....:|:..|:..|...::..|:.:|..||.:::     .|.:|....    |
 Worm   223 LESTEKKEGRLLVNAGHPEEDPDIFVISHLTHVLQPHQLGGIRFMYDNTIESLGEYKKSDGFGCI 287

  Fly  1373 LCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYE----VEKFLDQGSVLR 1433
            |...||||||:|.|..   ..:..:......:  |||.|.....:|..|    :.||.|.|..:|
 Worm   288 LAHSMGLGKTIQVITF---SEIFLRATKAKKV--LVIVPINTIQNWYSEYDKWIPKFSDTGDRIR 347

  Fly  1434 PLHYYGFPVG------REKLRSDIGTKCNLVVASYDTVR-------------------------- 1466
            ....:....|      |..|.........:::..||..|                          
 Worm   348 SFEVFLLGDGVKTFDQRVNLIEQWDQTGGVMLVGYDMFRLLIKMTLPKKQKKGRPKLNLSGISSG 412

  Fly  1467 -------------KDIDFFSGIHF---------------------NYCVLDEGHIIKNGKTKSSK 1497
                         ::::|.:|...                     :..|.||||.|||...:.|.
 Worm   413 FSKDSSEDQKLRDEELEFETGFTSGGRVRQEAYSLIRSALLEPGPDLVVCDEGHKIKNITAEISM 477

  Fly  1498 AIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQE 1562
            .:..:....|::|:|.|:|||:||.:.:.||:.|.:|||.|.|:.||.:||.:.:...||..:.:
 Worm   478 TLGAINTKRRIVLTGYPLQNNLLEYFCMIDFVRPKYLGTRKSFIDRFEKPIKNGQCVDSSPDDVK 542

  Fly  1563 AGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDF----SNKHLKDCL 1623
            ..:.....|...|..|:.||....:.|.||......||...|.:|.:||.:|    .|:      
 Worm   543 IALQRTHVLVELVKGFVQRRTHHLLKKILPESKEYVLLLRKSQIQRQLYRNFVLWAKNE------ 601

  Fly  1624 DKLGDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLR------------------------ 1664
                       :..|..|..:...|......:.|||.::.|                        
 Worm   602 -----------IAANNDAVFNPLMAFSACSKIWNHPDILYRLVEQKKRAEEDKKRVEQMKFAQLQ 655

  Fly  1665 --QSEELTKVTSQLALSNSSL-------------------------------------------- 1683
              |.::..::...:.:.|:.:                                            
 Worm   656 QQQQQQQQQLQGMMMMGNNGMMPGFGAQFHPQQNGMMMQNGSWHPNNYQMPSPFNSIPSNPSTPT 720

  Fly  1684 ---------------------------DDIEHSAKL---------PALKQLLLDCG--IGVQTES 1710
                                       :::|..:::         ...::.:|:.|  |.:..|.
 Worm   721 SSSTSKSAKKTKKPRGSKKAPKSDEEDEEVEKESRMKYDWTFELFEKYQEGVLENGYKIVISLEI 785

  Fly  1711 VSQ-----HRALIFCQLKAMLDIVEQDLLRRHL-----------PSVTYLRLDGSVPASQRQDIV 1759
            :.:     .:.|||.|....||::|:.|.:|.:           .:..||||||:...:.|:.::
 Worm   786 LDESTQIGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRNYLRLDGTTSGADREKLI 850

  Fly  1760 NNFNSDPSIDVLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLI 1824
            |.|||:|.:.:.|::|..|.||:||..|:..|.::..|||..|.||:.|.:|.||:|...|||||
 Worm   851 NRFNSEPGLSLFLISTRAGSLGINLVSANRCIIIDACWNPCHDAQAVCRVYRYGQQKKTFVYRLI 915

  Fly  1825 TRNSLEEKIM-------GLQKFKILTANTVVSAENASLQTM 1858
            ..||:|..|.       |||:..:..|....:.....|:|:
 Worm   916 MDNSMERSIFNRQISKHGLQQRVVDDAQVDANISQKELETL 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 152/720 (21%)
rad-54.L2NP_501545.1 HepA 60..940 CDD:440319 155/738 (21%)
DEXHc_ARIP4 256..547 CDD:350827 67/295 (23%)
Blue background indicates that the domain is not in the aligned region.

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