DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and chd6

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:XP_004918574.2 Gene:chd6 / 100498254 XenbaseID:XB-GENE-5964535 Length:2667 Species:Xenopus tropicalis


Alignment Length:678 Identity:197/678 - (29%)
Similarity:304/678 - (44%) Gaps:148/678 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1282 SDPDESV---------RLLS---------------THCFANLVQLMPLDGKTEQLKSDPLQARKT 1322
            ::|||.:         |:|.               ||.......| |.:..|.:|:.| :...|.
 Frog   357 TEPDEDMFNPDYVEVDRVLEVAHTKDSDTGEVREVTHFLVKWCSL-PYEESTWELEED-VDPVKV 419

  Fly  1323 RDREFLDYL--FNPKSIP------------NYKVPVPISVELRCYQQAGINWLWFLNKYNLHG-I 1372
            ::.|.|..:  ..|...|            .||    .:.:||.||..|:|||.| |.||... |
 Frog   420 KEFEALQKVPDLTPMERPASETWQKLVSSRTYK----NNNQLREYQLEGMNWLLF-NWYNRKNCI 479

  Fly  1373 LCDDMGLGKTLQTICILA--------GDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQG 1429
            |.|:||||||:|:|..|:        |             |.|:|.|.:...:|..|...:.:..
 Frog   480 LADEMGLGKTIQSITFLSEIFFMGIRG-------------PFLIIAPLSTITNWEREFRTWTEMN 531

  Fly  1430 SVLRPLHYYGFPVGREKL-------RSDIGT------KCNLVVASYDTVRKDIDFFSGIHFNYCV 1481
            :::    |:|..:.|:.:       |.:.||      |..:|:.:::.:..|......|.::..:
 Frog   532 TIV----YHGSQISRQMIHQYEMYYRDEQGTPIPGIYKFQIVITTFEMILADCPELKKIRWSCVI 592

  Fly  1482 LDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSR 1546
            :||.|.:||...|..:.:|.:...|:::|:|||:||:|.||:||.:||.|....:|..|::.|. 
 Frog   593 IDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELYSLLNFLEPVQFPSESTFLEEFG- 656

  Fly  1547 PILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLY 1611
                  |.|:  :||      ::.|...:.|.:|||:|:||.|:|.||....:..||:.:|.:.|
 Frog   657 ------DLKT--EEQ------VKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYY 707

  Fly  1612 EDFSNKHLKDCLDKLGDSSSASMVTE--NLSAKTHIFQALRYLQNVCNHPKLVLRQSEEL----T 1670
            .....|:.             :.:|:  |.....::...:..|:..||||.|:....|::    .
 Frog   708 RAILEKNF-------------TFLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFR 759

  Fly  1671 KVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLR 1735
            |..|..||.......|:.:.||..:.:||.....|       .|:.|||.|:...|||:|..|::
 Frog   760 KRHSPDALDFQLQAMIQAAGKLVLIDKLLPKLIAG-------GHKVLIFSQMVRCLDILEDYLIQ 817

  Fly  1736 RHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSID--VLLLTTMVGGLGLNLTGADTVIFVEHDWN 1798
            |.   ..|.|:||.|..:.||..::.| ..|..|  |.||.|..||||:|||.|||.|..:.|||
 Frog   818 RR---YIYERIDGRVRGNLRQAAIDRF-CKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWN 878

  Fly  1799 PMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKI-------MGLQKFKILTANTVVSAENASLQ 1856
            |..||||..|.|||||.|.|.|||||||||.|.::       :||.|..:...|.  ......:|
 Frog   879 PQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINR--KGNTNGVQ 941

  Fly  1857 TMGTSQIFDLFNGG--------KDKGAE 1876
            .:...::.||...|        :|:|::
 Frog   942 PLSKIEVEDLLRKGAYGALMDEEDEGSK 969

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 172/543 (32%)
chd6XP_004918574.2 CD1_tandem_CHD5-9_like 281..347 CDD:349315
CD2_tandem_CHD5-9_like 366..426 CDD:349310 11/61 (18%)
PLN03142 456..>981 CDD:215601 178/573 (31%)
DEXHc_CHD6 457..678 CDD:350816 73/253 (29%)
Blue background indicates that the domain is not in the aligned region.

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