DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and smarca1

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:XP_002931866.2 Gene:smarca1 / 100101797 XenbaseID:XB-GENE-492011 Length:1034 Species:Xenopus tropicalis


Alignment Length:625 Identity:200/625 - (32%)
Similarity:293/625 - (46%) Gaps:94/625 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly  1285 DESVR----LLSTHCFANLVQ-------LMPL-----------DGKTEQLKSDPLQARKTRDREF 1327
            |.|.|    |..|..||:.:|       ..||           |.|...|.:...:.|:|...|.
 Frog    67 DRSKRFEFLLKQTELFAHFIQPAAQKSPTSPLKVKLGRPKIKKDEKQNLLSAGDYRHRRTEQEED 131

  Fly  1328 LDYLFNPKSIPNYKVPVPISVE------LRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTI 1386
            .:.|...:...|..|....|..      ||.||..|:||:..|.:..::|||.|:||||||||||
 Frog   132 EELLSESRKTSNVCVRFEESPSYIKGGTLRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTI 196

  Fly  1387 CILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDI 1451
            .:|.....:|....    |.:|:.|.:...:|:.|.::::..   |..:...|....|.....|:
 Frog   197 ALLGYLKHYRNIPG----PHMVLVPKSTLHNWMNEFKRWIPS---LCAVCLIGDKNARAAFIRDV 254

  Fly  1452 --GTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTP 1514
              ..:.::.|.||:.|.|:...|...::.|.|:||.|.|||.|:|.|:.::..|..:||:|:|||
 Frog   255 MMPGEWDVCVTSYEMVIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTP 319

  Fly  1515 IQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFL 1579
            :|||:.|||:|.:||:|....:.:.|...|        |..:...:|:    .:|.||..:.|||
 Frog   320 LQNNLHELWALLNFLLPDVFNSAEDFDSWF--------DTNNCLGDQK----LVERLHAVLKPFL 372

  Fly  1580 LRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSSSASMVTENLSAKTH 1644
            |||:|.:|.|.||||....:...|..:|...|.....|.: |.|:..|...           |..
 Frog   373 LRRIKAEVEKSLPPKKEVKIYLGLGKMQREWYTKILMKDI-DILNSAGKMD-----------KMR 425

  Fly  1645 IFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPALKQLLLDCGIGVQTE 1709
            :...|..|:..||||.| ...:|.....|:...|       :.:|.|:..|.:||       ...
 Frog   426 LLNILMQLRKCCNHPYL-FDGAEPGPPYTTDTHL-------VYNSGKMVVLDKLL-------PKF 475

  Fly  1710 SVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNS-DPSIDVLLL 1773
            .....|.|||.|:..:|||:|...:.|   ...|.||||..|..||:..:..||| :.|..:.:|
 Frog   476 KEQGSRVLIFSQMTRVLDILEDYCMWR---GYEYCRLDGQTPHEQREAAIETFNSPNSSKFIFML 537

  Fly  1774 TTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQK 1838
            :|..||||:||..||.||..:.||||..|||||||||||||||.|.|:||||.|::||:|:...:
 Frog   538 STRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKTVRVFRLITDNTVEERIVERAE 602

  Fly  1839 FKILTANTVVS------------AENASLQTM--GTSQIF 1864
            .|:...:.|:.            |::..||.:  |.:.:|
 Frog   603 IKLRLDSIVIQQGRLIDQQSNKLAKDEMLQMIRHGATHVF 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 177/515 (34%)
smarca1XP_002931866.2 PLN03142 64..1027 CDD:215601 200/625 (32%)
Blue background indicates that the domain is not in the aligned region.

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